Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,410,235 – 2,410,344 |
Length | 109 |
Max. P | 0.576784 |
Location | 2,410,235 – 2,410,344 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 67.28 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -9.83 |
Energy contribution | -9.92 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -1.82 |
Structure conservation index | 0.33 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2410235 109 + 22224390 UGCUCGGCUGCUAGCGAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGUUCGUUUCGCUUUUCCAGCAAAAAAAAAA---AAUUGGCAUAGGCAAUUGCCCAAUU--GAUUU- ......((((..((((((((..((((((....((....))....))))))...))))))))....))))..........---((((((((........)).))))))--.....- ( -31.80) >DroPse_CAF1 79865 90 + 1 UGCUCAGAUGCUCGCAAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGCACGCUACGAA----------GG---------CAGAAGCAGCGUCA-----AGCAGUGUACAAA- ((((..((((((.((....(((((((......((....))..(((((((....))))))).----------))---------))))))))))))).-----)))).........- ( -36.70) >DroSim_CAF1 18663 102 + 1 UGCUCGGCUGCUAGCCAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGUUCGUUUCGCUUUUCCAGCAAA----------AAUUAGCAGAGGCAUUCGCCCAAUU--GAUUU- ......((((..(((.((((..((((((....((....))....))))))...)))).)))....))))..(----------((((((..(.(((....))))..))--)))))- ( -25.80) >DroEre_CAF1 56353 103 + 1 UGCUCGGCUGCUAGCCAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGUUCGUUUCGCUUUUCCAGC---A---AAA---AAUUAGCAGAGGCAAUUUCCCAAUU--AAUUU- ((((...(((((((...((...((((((....((....))....)))))).)).....(((.....)))---.---...---..))))))).))))...........--.....- ( -25.40) >DroWil_CAF1 79029 95 + 1 UGCUCAGAUGCUA--AAGAUUCUGUCAUAACGGCUUCGGCAUUCGUGACGCGCGCCUCGCACAA-------CG------CUUCAGCAGCAGCAGCA-----AAAAAAACAAAAAA (((((...((((.--(((.....(((((....((....))....)))))(((.....)))....-------..------))).))))...).))))-----.............. ( -23.70) >DroPer_CAF1 79352 90 + 1 UGCUCAGAUGCUCGCAAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGCACGCUACGAA----------GG---------CAGAAGAAGCGUCA-----AGCAGUGUACAAA- ((((..(((((((....))(((((((......((....))..(((((((....))))))).----------))---------)))))...))))).-----)))).........- ( -36.60) >consensus UGCUCAGAUGCUAGCAAGAUUCUGUCAUAACGGCUUCGGCACUCGUGGCGCUCGCUUCGCAUUU_______AG_________AAGUAGCAGAGGCA_____ACAAUU__AAAAA_ ((((....((((.....((..((((....))))..))......((.(((....))).))...........................))))..))))................... ( -9.83 = -9.92 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006