Locus 8469

Sequence ID X_DroMel_CAF1
Location 21,033,600 – 21,033,699
Length 99
Max. P 0.500000
window13910

overview

Window 0

Location 21,033,600 – 21,033,699
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.08
Mean single sequence MFE -26.14
Consensus MFE -5.58
Energy contribution -5.82
Covariance contribution 0.24
Combinations/Pair 1.27
Mean z-score -1.57
Structure conservation index 0.21
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21033600 99 - 22224390
UU-----UCACUUGCUGU------UUGUGUAGUCGAAAGCGA---CGUAUC-CCUCUCUCUCUCUGCUCACAAAAAUCGAAAGAAGUUAGCUAAGGUUGGGAA------AAAAUUAGGGA
..-----..(((((((.(------(((......)))))))))---.)).((-((((((..(((..(((.((.....((....)).)).)))..)))..)))).------.......)))) ( -20.90)
>DroSec_CAF1 4271 88 - 1
UU-----UCACUUGCUGU------UUGUGUAGUCGAAAGCGA---CGUAUC-CC----------UGCUCACAAAAAUCGAGAGAAGUUUGGAAAAGCUGGGAA------A-AAAGCGGGA
..-----...((((((.(------((.....((((....)))---)...((-((----------.(((..((((..((....))..))))....))).)))))------)-).)))))). ( -27.20)
>DroSim_CAF1 4815 89 - 1
UU-----UCACUUGCUGU------UUGUGUAGUCGAAAGCGA---CGUAUC-CC----------UGCUCACAAAAAUCGAGAGAAGUUUGGAAGAGCUGGGAA------AAAAAGCGGGA
..-----...((((((.(------((.....((((....)))---)...((-((----------.((((.((((..((....))..))))...)))).)))).------))).)))))). ( -30.60)
>DroEre_CAF1 4356 100 - 1
UUGCUGUUCACUUGCUGU------UUGUGUAGUCGCAUGCGA---CGCAUCCCC----------UGCUCCCGAAAAGCGAGAGAAGUUUGCCAA-GCUCGGAAAGAAGGAAAAAACGCGA
((((..(((.((((((.(------(((....((((....)))---)(((.....----------)))...)))).)))))).)))((((.((..-.((.....))..))...)))))))) ( -25.30)
>DroYak_CAF1 4815 98 - 1
UU-----UCACUUGCUGUUUCUGUUUGAGUAGUCGAAAGCGACGACGUAUC-CC----------UGCUCACAAAAAUCGAGAGAAGUUUGCUGA-GCGACGAA-----UAAAAAUCGUAA
..-----.....(((.((((.((((((.((.((((....)))).)).....-..----------((((((((((..((....))..)))).)))-))).))))-----)).)))).))). ( -26.70)
>consensus
UU_____UCACUUGCUGU______UUGUGUAGUCGAAAGCGA___CGUAUC_CC__________UGCUCACAAAAAUCGAGAGAAGUUUGCAAA_GCUGGGAA______AAAAAGCGGGA
.......((.((.((.......................(((....)))......................((((..((....))..)))).....)).)))).................. ( -5.58 =  -5.82 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:44 2006