Locus 8468

Sequence ID X_DroMel_CAF1
Location 21,033,297 – 21,033,405
Length 108
Max. P 0.646801
window13909

overview

Window 9

Location 21,033,297 – 21,033,405
Length 108
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 82.48
Mean single sequence MFE -26.40
Consensus MFE -13.65
Energy contribution -13.53
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -2.65
Structure conservation index 0.52
SVM decision value 0.24
SVM RNA-class probability 0.646801
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21033297 108 + 22224390
----CACACAUGUACAAAUGUGUACUUAUAUGUAUGUAUAAGUGUGUCGAAAUAC----AUACAGUUGUCGGCGAAUGGGAAUUGCAGCUGCGGCACACAAAGCGAAAAAUCAAAU
----.((((((......))))))..((((((....))))))((((((((......----...(((((((...(......)....)))))))))))))))................. ( -25.60)
>DroSec_CAF1 3988 100 + 1
----CACACAUGCACAAAUGUGUA------------UAUAAAUGUGUAGAAAUACACACAUAUAGUUGUGUGCGAAUGGGAAUUGCAGCUGCGGCACACAAAGCGAAAAAUCAAAU
----.((((((......)))))).------------((((..((((((....))))))..)))).((((((((.(((....)))((....)).))))))))............... ( -27.70)
>DroSim_CAF1 4532 100 + 1
----CACACAUGCACAAAUGUGUA------------UAUAAAUGUGUAGAAAUACACACAUAUAGUUGUGUGCGGAUGGGAAUUGCAGCUGCGGCACACAAAGCGAAAAAUCAAAU
----.((((((......)))))).------------((((..((((((....))))))..)))).((((((((.(.((.......))....).))))))))............... ( -28.10)
>DroYak_CAF1 4522 100 + 1
CUCGCACACAUGUACUUGGGUGUA------------UAUAAAUGUGUACAAACA----CAUAUAGUUGUGGGCGAAUGGGAAUUGCAGCUGAGGCACACAAAGCGAAAAAUGAAAU
.((((.....((((..((..((((------------(((....)))))))..))----..)))).(((((.((((.......)))).((....)).))))).)))).......... ( -24.20)
>consensus
____CACACAUGCACAAAUGUGUA____________UAUAAAUGUGUAGAAAUAC___CAUAUAGUUGUGGGCGAAUGGGAAUUGCAGCUGCGGCACACAAAGCGAAAAAUCAAAU
.....((((((......))))))...................(((((........................((((.......)))).((....)))))))................ (-13.65 = -13.53 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:43 2006