Locus 8467

Sequence ID	X_DroMel_CAF1
Location	21,032,274 – 21,032,392
Length	118
Max. P	0.992079

overview

Window 7

Location	21,032,274 – 21,032,392
Length	118
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	91.14
Mean single sequence MFE	-36.32
Consensus MFE	-29.78
Energy contribution	-30.34
Covariance contribution	0.56
Combinations/Pair	1.03
Mean z-score	-2.42
Structure conservation index	0.82
SVM decision value	2.31
SVM RNA-class probability	0.992079
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21032274 118 + 22224390
AUAUGAAUGGCUGGCACAAGUG--UGCGUGCGUAUUAGCCGAGGUAGCAGGGUAGCAGCAAAAUUAAUUAAGUUGAGAAAAUGUCAACGCUGCUGCUUUUUGGCUUGACAACGCUUCUCA
...(((..(((..((((....)--)))((..((...((((((((((((((.((.(((......(((((...))))).....)))..)).))))))))..))))))..)).)))))..))) ( -37.60)
>DroSec_CAF1 3041 110 + 1
ACAUGAAUGGCUGGCACGAGUG--UGCGUGCGUAUUAGCC--------AGGGUAGCAGCAAAAUUAAUUAAGUUGAGAAAAUGUCAACGCUGCUGCUUUUUGGCUUGACAACGCUUCCAA
...((...(((..(((((....--..)))))((...((((--------(((((((((((....((....))(((((.......))))))))))))))..))))))..))...)))..)). ( -36.80)
>DroSim_CAF1 3571 110 + 1
ACAUGAAUGGCUGGCACGAGUG--UGCGUGCGUAUUAGCC--------AGGGUAGCAGCAAAAUUAAUUAAGUUGAGAAAAUGUCAACGCUGCUGCUUUUUGGCUUGACAACGCUUCCAA
...((...(((..(((((....--..)))))((...((((--------(((((((((((....((....))(((((.......))))))))))))))..))))))..))...)))..)). ( -36.80)
>DroEre_CAF1 3107 109 + 1
ACAUG-AUGGCUGGCACGAGUG--UGCGUGCGUAUUAGCC--------GGGGUAGCAGCAAAAUUAAUUAAGUUGAGAAAAUGUCAACGCUGCUGCUUUUUGGCUUGACAACGCUGCUCA
...((-(((((..(((((....--..)))))((...((((--------(((((((((((....((....))(((((.......))))))))))))))..))))))..))...)))).))) ( -37.20)
>DroYak_CAF1 3297 104 + 1
ACAUGAAUGGCUGGCACGAGUGUGUGCGUGCGUAUUAGCC--------GGGGUAGCAGCAAAAUUAAUUAAGUUGAGAAAAUGUCAACGCUGCUGCUUUUUGGCUUGACAAC--------
.........((..(((((....)))))..))((...((((--------(((((((((((....((....))(((((.......))))))))))))))..))))))..))...-------- ( -33.20)
>consensus
ACAUGAAUGGCUGGCACGAGUG__UGCGUGCGUAUUAGCC________AGGGUAGCAGCAAAAUUAAUUAAGUUGAGAAAAUGUCAACGCUGCUGCUUUUUGGCUUGACAACGCUUCCAA
........(((..(((((........)))))((...((((........(((((((((((....((....))(((((.......))))))))))))))))..))))..))...)))..... (-29.78 = -30.34 +   0.56)

alignment

secondary structure

dotplot

Window 8

Location	21,032,274 – 21,032,392
Length	118
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	91.14
Mean single sequence MFE	-29.75
Consensus MFE	-23.05
Energy contribution	-22.89
Covariance contribution	-0.16
Combinations/Pair	1.05
Mean z-score	-2.42
Structure conservation index	0.77
SVM decision value	1.52
SVM RNA-class probability	0.961005
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21032274 118 - 22224390
UGAGAAGCGUUGUCAAGCCAAAAAGCAGCAGCGUUGACAUUUUCUCAACUUAAUUAAUUUUGCUGCUACCCUGCUACCUCGGCUAAUACGCACGCA--CACUUGUGCCAGCCAUUCAUAU
...(((((((.....((((....((((((((((((((.......)))))..((......))))))).....)))).....))))...))))..(((--(....))))......))).... ( -28.90)
>DroSec_CAF1 3041 110 - 1
UUGGAAGCGUUGUCAAGCCAAAAAGCAGCAGCGUUGACAUUUUCUCAACUUAAUUAAUUUUGCUGCUACCCU--------GGCUAAUACGCACGCA--CACUCGUGCCAGCCAUUCAUGU
.(((..((((.....(((((...((((((((.(((((................))))).))))))))....)--------))))...))))..(((--(....))))...)))....... ( -31.59)
>DroSim_CAF1 3571 110 - 1
UUGGAAGCGUUGUCAAGCCAAAAAGCAGCAGCGUUGACAUUUUCUCAACUUAAUUAAUUUUGCUGCUACCCU--------GGCUAAUACGCACGCA--CACUCGUGCCAGCCAUUCAUGU
.(((..((((.....(((((...((((((((.(((((................))))).))))))))....)--------))))...))))..(((--(....))))...)))....... ( -31.59)
>DroEre_CAF1 3107 109 - 1
UGAGCAGCGUUGUCAAGCCAAAAAGCAGCAGCGUUGACAUUUUCUCAACUUAAUUAAUUUUGCUGCUACCCC--------GGCUAAUACGCACGCA--CACUCGUGCCAGCCAU-CAUGU
..(((((((((((...((......)).)))))(((((.......)))))............)))))).....--------((((.....(((((..--....))))).))))..-..... ( -30.80)
>DroYak_CAF1 3297 104 - 1
--------GUUGUCAAGCCAAAAAGCAGCAGCGUUGACAUUUUCUCAACUUAAUUAAUUUUGCUGCUACCCC--------GGCUAAUACGCACGCACACACUCGUGCCAGCCAUUCAUGU
--------((((...((((....((((((((.(((((................))))).)))))))).....--------)))).....(((((........)))))))))......... ( -25.89)
>consensus
UGAGAAGCGUUGUCAAGCCAAAAAGCAGCAGCGUUGACAUUUUCUCAACUUAAUUAAUUUUGCUGCUACCCU________GGCUAAUACGCACGCA__CACUCGUGCCAGCCAUUCAUGU
.......................((((((((.(((((................))))).)))))))).............((((.....(((((........))))).))))........ (-23.05 = -22.89 +  -0.16)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:42 2006