Locus 8465

Sequence ID X_DroMel_CAF1
Location 21,031,368 – 21,031,479
Length 111
Max. P 0.915418
window13904

overview

Window 4

Location 21,031,368 – 21,031,479
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.09
Mean single sequence MFE -34.56
Consensus MFE -27.70
Energy contribution -27.66
Covariance contribution -0.04
Combinations/Pair 1.14
Mean z-score -1.94
Structure conservation index 0.80
SVM decision value 1.10
SVM RNA-class probability 0.915418
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21031368 111 - 22224390
ACUUGUUGGCCGGGUAAAAGGAUCCGGAGAUCCCCGGGUUCAGUGUUCAAUAAACACACCCCCAGAAAACACCAC---------GGCCAGGAUAACCAGCAUAGCCAGGAUAAUCGACAG
.((((.(((((((((....((((((((......)))))))).(((((.....))))).............))).)---------)))))((....))........))))........... ( -35.90)
>DroSec_CAF1 2171 110 - 1
ACUUGUUGGCCGGGUAA-AGGAUCCGGAGAUCCCCGGGUUCAGUGUUCAAUAAACACACCCCCAGAAAACACCAC---------AGUCCGGAUAACCAGCAUAGCCAGGAUAACCGGCAG
...(((((((((((...-.((((((((......)))))))).(((((.....)))))..................---------..)))))....))))))..(((.((....))))).. ( -36.10)
>DroSim_CAF1 2687 111 - 1
ACUUGUUGGCCGGGUAAAAGGAUCCGGAGAUCCCCGGGUUCAGUGUUCAAUAAACACACCCCCAGAAAACACCAC---------AGUCCGGAUAACCAGUAUAGCCAGGAUAACCGGCAG
(((.((((.(((((.....((((((((......)))))))).(((((.....)))))..................---------..))))).)))).)))...(((.((....))))).. ( -35.20)
>DroEre_CAF1 2222 106 - 1
ACUUGUUGGCAGGGUAAAAGGAUCCGGAGAUCC-CGGGCUCAGUGUUCAAUAAACACGCCCCCAGAAACCAGCAC-------------AGGAUAACCAGGAUAGCCAGGGUAACCAGCAG
...((((((..((((....(..(((((.....)-))))..).(((((.....)))))))))......(((.....-------------.((....)).((....))..)))..)))))). ( -31.20)
>DroYak_CAF1 2380 120 - 1
ACUUGUUGGCCGGGUAAAAGGAUCCGCAGAUCCCCGGGUUCAGUGUUCAAUAAACACACCCCCAGAAACCAGCACAGCCAGCACAGCCAGGAUAACCAGUAUAGCCAGGAUAACCGGCAG
...(((((((.((((....(((((((........))))))).(((((.....)))))))))...(....)......)))))))..(((.((.((.((..........)).)).))))).. ( -34.40)
>consensus
ACUUGUUGGCCGGGUAAAAGGAUCCGGAGAUCCCCGGGUUCAGUGUUCAAUAAACACACCCCCAGAAAACACCAC_________AGCCAGGAUAACCAGCAUAGCCAGGAUAACCGGCAG
...(((((((.((((....((((((((......)))))))).(((((.....)))))))))............................((....))......))).((....)))))). (-27.70 = -27.66 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:39 2006