Locus 8464

Sequence ID X_DroMel_CAF1
Location 21,030,384 – 21,030,504
Length 120
Max. P 0.997831
window13903

overview

Window 3

Location 21,030,384 – 21,030,504
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.00
Mean single sequence MFE -27.79
Consensus MFE -25.49
Energy contribution -25.69
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.17
Structure conservation index 0.92
SVM decision value 2.94
SVM RNA-class probability 0.997831
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21030384 120 + 22224390
AAUUUCCCUUUUAGCAAUAAAAUGCACAGUAACUGGAUCCGCUUCUCUGUUUUGUAAUCAUUUCAUUUCUUAGUCAAAGCAGUCAAGACGGAAGUUAUUAUUUGCUAGGCAACUGCAUAA
.............(((......)))..(((((((...(((((((..((((((((....................))))))))..))).)))))))))))...(((.((....)))))... ( -27.65)
>DroSec_CAF1 1218 120 + 1
AAUUUCCCUUUUAGCAAUAAAAUGCACAGUAACUGGAUCCGCUUCUCUGUUUUGUAAUCAUUUCAUUUCUUAGUCAAAGCAGUCAAGACGGAAGUUAUUAUUUGCUAGGCAACUGCAUAA
.............(((......)))..(((((((...(((((((..((((((((....................))))))))..))).)))))))))))...(((.((....)))))... ( -27.65)
>DroSim_CAF1 1724 120 + 1
AAUUUCCCUUUUAGCAAUAAAAUGCACAGUAACUGGAUCCGCUUCUCUGUUUUGUAAUCAUUUCAUUUCUUAGUCAAAGCAGUCAAGACGGAAGUUAUUAUUUGCUAGGCAACUGCAUAA
.............(((......)))..(((((((...(((((((..((((((((....................))))))))..))).)))))))))))...(((.((....)))))... ( -27.65)
>DroEre_CAF1 1352 120 + 1
AAUUUCGCUUUAAGCAAUAAAAUGCACAGCAACUGGACCCGCUUCUCUGUUUUGUAAUCAUUUCAUUUCUUAGUCAAAGCAGCCAAGGCGGAAGUUAUUAUUUGCUAGGCAACUGCAUAA
......((.....))......((((..(((((...(((((((((..((((((((....................))))))))...))))))..))).....)))))((....)))))).. ( -27.85)
>DroYak_CAF1 1462 120 + 1
CAUUUCCCUUUAAGCAAUAAAAUGCACAGUAACUGGACCCGCUUCUCUGUUUUGUAAUCAUUUCAUUUCUUAGUCAAAGCAGCCAAGGCGGAAGUUAUUAUUUGCUAGGCAACUGCAUAA
.............(((......)))..(((((((....((((((..((((((((....................))))))))...)))))).)))))))...(((.((....)))))... ( -28.15)
>consensus
AAUUUCCCUUUUAGCAAUAAAAUGCACAGUAACUGGAUCCGCUUCUCUGUUUUGUAAUCAUUUCAUUUCUUAGUCAAAGCAGUCAAGACGGAAGUUAUUAUUUGCUAGGCAACUGCAUAA
.............(((......)))..(((((((....((((((..((((((((....................))))))))..))).))).)))))))...(((.((....)))))... (-25.49 = -25.69 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:38 2006