Locus 8462

Sequence ID X_DroMel_CAF1
Location 21,029,699 – 21,029,818
Length 119
Max. P 0.795956
window13900

overview

Window 0

Location 21,029,699 – 21,029,818
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.65
Mean single sequence MFE -29.43
Consensus MFE -23.76
Energy contribution -24.07
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -1.78
Structure conservation index 0.81
SVM decision value 0.60
SVM RNA-class probability 0.795956
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21029699 119 + 22224390
AUAAUUAUCUUUUGACGCGAUU-UGGCCAAGUACUUGAAAGUUGAGGCCCGUCAAAAUUUGACAAUACUAUACAUUGAGCCAAUGACUUCGGUUCUUUUGGAAGCACUUUUGGGUGCUUA
....(((..((((((((.....-.((((....(((....)))...))))))))))))..)))((((.......))))..((((.(((....)))...))))(((((((....))))))). ( -30.30)
>DroSec_CAF1 532 110 + 1
AUAAUUAUCUUG---------U-UGGCAAAGUACUUGAAAAUUGAGGCCCGUCAAAAUUUGACAAUACUAUAAAUCGAGCCAAUGACUUCGGGUCUCUUGGAACCACUUUUGGGUGCUUA
............---------.-.....(((((((..(((...(((((((((((.....)))).............(((........)))))))))).((....)).)))..))))))). ( -28.10)
>DroSim_CAF1 1053 110 + 1
AUAAUUAUCUUG---------U-UGGCAAAGUACUUGAAAAUUGAGGCCCGUCAAAAUUUGACAAUACUAUAAAUCGAGCCAAUGACUUCGGGUCUCUUGGAACCACUUUUGGGUGCUUA
............---------.-.....(((((((..(((...(((((((((((.....)))).............(((........)))))))))).((....)).)))..))))))). ( -28.10)
>DroYak_CAF1 695 110 + 1
AAAAUGAAAGUG---------CACAGCGAAGUGCUUGAAAAUUGAGGCCCGUCAAAAUUUGACAAUUCUGUAAGUCGAGCCAAUGACUUCGGGUCUUUUGGAACCACUUUUGGGUGCA-A
..........((---------(((...((((((..........(((((((((((.....))))......(.((((((......)))))))))))))).......))))))...)))))-. ( -31.23)
>consensus
AUAAUUAUCUUG_________U_UGGCAAAGUACUUGAAAAUUGAGGCCCGUCAAAAUUUGACAAUACUAUAAAUCGAGCCAAUGACUUCGGGUCUCUUGGAACCACUUUUGGGUGCUUA
............................(((((((..(((...(((((((((((.....)))).............(((........)))))))))).((....)).)))..))))))). (-23.76 = -24.07 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:35 2006