Locus 8461

Sequence ID X_DroMel_CAF1
Location 21,025,174 – 21,025,274
Length 100
Max. P 0.867653
window13899

overview

Window 9

Location 21,025,174 – 21,025,274
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 87.88
Mean single sequence MFE -31.95
Consensus MFE -21.75
Energy contribution -23.38
Covariance contribution 1.62
Combinations/Pair 1.13
Mean z-score -2.73
Structure conservation index 0.68
SVM decision value 0.86
SVM RNA-class probability 0.867653
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21025174 100 - 22224390
AUAGCUUCACUUGGCCACACUGCCGUAGUUGAGUUUGCUACAAAAAUGCCAGGCGAAAACUUAAAAUGGUUUAAGCGUCGUGCACUUGCAGUAUUCCAAU
..........((((....(((((.(((((.......))))).....(((..((((.(((((......)))))...))))..)))...)))))...)))). ( -24.20)
>DroSec_CAF1 11946 98 - 1
AUAGCUUCACUUGGCCGCACUGCCGUAGUUGAGUUUGCUGCAAAAAUGCCAGGCGAAAACUUA--AUAGUUUAAGCGCCGUGCACUUGCAGUAUUCCAAU
..(((((.(((((((......)))).))).)))))((((((((...(((..((((.(((((..--..)))))...))))..))).))))))))....... ( -32.50)
>DroEre_CAF1 8817 97 - 1
AUAGCUUCACUUGGCCACACUGGCGGAGUGGAGUUU-CUGCAAAAAUGCGGGGCUCUUGCUUA--AUAGCUUAAGCGCAGUGCACUUGCAGUAUUCCAAU
..((((((((((.(((.....))).)))))))))).-.........((((((((.((((((((--(....))))))).)).)).)))))).......... ( -37.00)
>DroYak_CAF1 10128 98 - 1
AUAGCUUCACUUGGCCACACUGGCGGAGUUGAGUUUGCUGCAAAAAUGCCAGGCGAAAACCUA--AUAGUUUAAGCGCACUGCGCUUGCAGUAUUUCAAU
..(((((.((((.(((.....))).)))).)))))((((((((....((((((((.((((...--...))))...))).))).))))))))))....... ( -34.10)
>consensus
AUAGCUUCACUUGGCCACACUGCCGGAGUUGAGUUUGCUGCAAAAAUGCCAGGCGAAAACUUA__AUAGUUUAAGCGCAGUGCACUUGCAGUAUUCCAAU
..(((((.((((.(((.....))).)))).)))))((((((((...(((...(((.(((((......)))))...)))...))).))))))))....... (-21.75 = -23.38 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:34 2006