Locus 8460

Sequence ID X_DroMel_CAF1
Location 21,022,246 – 21,022,338
Length 92
Max. P 0.999033
window13898

overview

Window 8

Location 21,022,246 – 21,022,338
Length 92
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 75.21
Mean single sequence MFE -34.23
Consensus MFE -20.79
Energy contribution -22.23
Covariance contribution 1.44
Combinations/Pair 1.16
Mean z-score -2.80
Structure conservation index 0.61
SVM decision value 3.34
SVM RNA-class probability 0.999033
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21022246 92 - 22224390
GGGG-GUUGGCUUUCGUGGACACCUUACCACCAACU-------AUUGUCCUAGAAAGCCAUCACCC-----CACUGCCAUUUGUUGUGUUGUGUAAUCAGUACUC
((((-..((((((((..(((((..............-------..)))))..))))))))...)))-----).............((((((......)))))).. ( -29.29)
>DroSec_CAF1 8957 92 - 1
GGGG-GUUGGCUUUCGUGGACACCGUACCACCCACU-------ACUGUCGCGGAAAGCCACCACCC-----CACGGCCAUUUGUUGUGUUGUGUAAUCAGUACUC
((((-((.(((((((.((((((..(((........)-------)))))).)))))))))))).)))-----((((((((.....)).))))))............ ( -31.10)
>DroEre_CAF1 5823 99 - 1
GGGGAGUUGGCUUUCGCGGACGCUAUUGUAUU---UGCAAUGUAUUUUCCGGGAAAGCCAACGCCCCC---CACUGGCAUUUGUCGUGUUGUGUAAUCAGUAAUC
((((.((((((((((.((((...((((((...---.)))))).....)))).)))))))))).)))).---(((.(((....))))))................. ( -40.60)
>DroYak_CAF1 7064 99 - 1
GGGGGAUUGGCUUUCGUGGACACCAUACCACCCACUCCAA------GUCCUCGAAAGCCAGCGCCCCCAUUCGUUGCCAUUCGUUGUGUUGUGUAAUCAGUAAUC
(((((.((((((((((.((((...................------)))).))))))))))..)))))(((.(((((((..........)).))))).))).... ( -35.91)
>consensus
GGGG_GUUGGCUUUCGUGGACACCAUACCACCCACU_______AUUGUCCUGGAAAGCCAACACCC_____CACUGCCAUUUGUUGUGUUGUGUAAUCAGUAAUC
((((.((((((((((..(((((.......................)))))..)))))))))).))))....(((...(((.....)))..)))............ (-20.79 = -22.23 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:33 2006