Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,018,652 – 21,018,743 |
Length | 91 |
Max. P | 0.505906 |
Location | 21,018,652 – 21,018,743 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.48 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -25.25 |
Energy contribution | -26.70 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.24 |
Structure conservation index | 0.78 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21018652 91 - 22224390 CAGGCUUAGACAGACAGCCUCUGGUCAGAG-GGGCGUGGCAAGCCUGACCGCCACAUACAGGCCGAAAAUACACACGUACACACACAUACAC ..(((((.........((((((......))-))))(((((..........)))))....)))))............................ ( -24.80) >DroSec_CAF1 5377 92 - 1 CAGGCUUAGCCAGCCAGCCUCUGGUCAGGGGGGGCGUGGCAAGCCUGACCGCCACACACAGGGCGAACAUACACACGGACACACACAUACAC (((((((.(((((((..(((((....))))).))).)))))))))))..((((........))))........................... ( -37.20) >DroSim_CAF1 5105 92 - 1 CAGGCUUAGCCAGCCAGCCUCUGGUCAGGGGGGGCGUGGCAAGCCUGACCGCCACACACAGGGCUAACAUACACACGGACACACACAUACAC (((((((.(((((((..(((((....))))).))).)))))))))))...(((........)))............................ ( -34.90) >consensus CAGGCUUAGCCAGCCAGCCUCUGGUCAGGGGGGGCGUGGCAAGCCUGACCGCCACACACAGGGCGAACAUACACACGGACACACACAUACAC (((((((.(((((((..(((((....))))).))).)))))))))))..((((........))))........................... (-25.25 = -26.70 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:30 2006