Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,016,686 – 21,016,785 |
Length | 99 |
Max. P | 0.913413 |
Location | 21,016,686 – 21,016,785 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 67.12 |
Mean single sequence MFE | -42.88 |
Consensus MFE | -21.69 |
Energy contribution | -21.67 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.44 |
Mean z-score | -1.77 |
Structure conservation index | 0.51 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21016686 99 - 22224390 CCAGAUAGCCAAGCAACUGCAAGGCGGCGGAGCCGGAGGACCAGGUGGUGG------ACAGCCGGCUGGCGGCUACCAGCCAAGCGGUGGCUAUGGCGGAGGACC ((.....(((((((.(((((..(((...(((((((.....((((.((((..------...)))).))))))))).)).)))..))))).))).))))...))... ( -45.40) >DroVir_CAF1 39731 98 - 1 CCAAAUAGCCAAGCAGCUGCAGGGAGGCGGCGCCAAUGGCGGCGGUGGUGCCAACGGCGGAGGCAACAACGCUUAUCAACCAAGCGGAGGCUAUUCAU------- ...(((((((..((..((((..(..((((.((((.........)))).))))..).))))..)).....(((((.......)))))..)))))))...------- ( -38.10) >DroGri_CAF1 351 95 - 1 CCAAAUUGCCAAGCAGUUGCAGGGAGGCGGCGCCAACGGCGGCAA---UGCUCAGGGCGGUGGUAACAACGCCUAUCAGCCAAGCGGCGGCUAUUCAU------- ....((((((.....(((((......)))))(((...))))))))---)(((..(((((.((....)).)))))....(((....)))))).......------- ( -33.40) >DroSec_CAF1 3473 99 - 1 CCAGAUAGCCAAGCAACUGCAGGGCGGCGGAGCCGGAGGACCCGGUGGUGG------CCAGCCUGCUGGCGGCUACCAGCCGAGCGGUGGCUAUGGCGGAGGACC ((.....(((((((.(((((....((((...(((((.....)))))(((((------((.(((....)))))))))).)))).))))).))).))))...))... ( -52.40) >DroYak_CAF1 1476 99 - 1 CCAGAUAGCCAAGCAACUGCAGGGCGGCGGAGCCGGAGGAGCCGGUGGUGG------UCAGCCGGCUAGUGGCUACCAGCCAAGCGGUGGCUAUGGCGGAGGAUC ((.....(((((((.(((((..(((...(((((((....(((((((.....------...)))))))..))))).)).)))..))))).))).))))...))... ( -47.40) >DroMoj_CAF1 148266 92 - 1 CCAAAUAGCCAAGCAGCUGCAGGGCGGUGGGGCCAA------CGGUGGCGCUAACGCAGGCGGGGCCAACGGCUACCAGCCCAGCGGUGGCUACUCAA------- .....(((((.....(((((.((((((.....))..------.((((((((....)).(((...)))....)))))).)))).)))))))))).....------- ( -40.60) >consensus CCAAAUAGCCAAGCAACUGCAGGGCGGCGGAGCCAAAGGAGCCGGUGGUGC______CCAGCCGGCCAACGGCUACCAGCCAAGCGGUGGCUAUGCAG_______ ....((((((.....(((((..((((((...)))...((..(((.((((.(...........).)))).)))...)).)))..)))))))))))........... (-21.69 = -21.67 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:29 2006