Locus 8456

Sequence ID X_DroMel_CAF1
Location 21,014,937 – 21,015,057
Length 120
Max. P 0.595129
window13892

overview

Window 2

Location 21,014,937 – 21,015,057
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -39.90
Consensus MFE -38.12
Energy contribution -38.23
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.59
Structure conservation index 0.96
SVM decision value 0.12
SVM RNA-class probability 0.595129
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21014937 120 + 22224390
AAUGGCCACCCAUCCGCCGGCUGCAUAGUUGAGGAGCUUAGCGCAUAAUAUAUUGUUGCAGUGCAGCAGCAACAUUCCGGCCAACAAAAUGUUUGCCAGAGCGGCAAUGGCUCCUCUCCC
...((((...........))))........((((((((..((((........(((((((......)))))))...((.(((.(((.....))).))).)))).))...)))))))).... ( -38.90)
>DroSec_CAF1 1721 120 + 1
AAUGGCCACCCAUCCGCCGGCUGCAUAGUUGAGGAGCUUAGCGCAUAAUAUAUUGUUGCAGUGCAGCAGCAACAUUCCGGCCAACAAAAUGUUUGCCAGAGCGGCAAUGGCUCCGCCCCC
...(((...((((..(((((((((((.((((((...))))))(((...........))).))))))).......(((.(((.(((.....))).))).))))))).))))....)))... ( -40.40)
>DroSim_CAF1 1408 120 + 1
AAUGGCCACCCAUCCGCCGGCUGCAUAGUUGAGGAGCUUAGCGCAUAAUAUAUUGUUGCAGUGCAGCAGCAACAUUCCGGCCAACAAAAUGUUUGCCAGAGCGGCAAUGGCUCCGCCCCC
...(((...((((..(((((((((((.((((((...))))))(((...........))).))))))).......(((.(((.(((.....))).))).))))))).))))....)))... ( -40.40)
>consensus
AAUGGCCACCCAUCCGCCGGCUGCAUAGUUGAGGAGCUUAGCGCAUAAUAUAUUGUUGCAGUGCAGCAGCAACAUUCCGGCCAACAAAAUGUUUGCCAGAGCGGCAAUGGCUCCGCCCCC
...(((...((((..(((((((((((.((((((...))))))(((...........))).))))))).......(((.(((.(((.....))).))).))))))).))))....)))... (-38.12 = -38.23 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:28 2006