Locus 8453

Sequence ID X_DroMel_CAF1
Location 21,012,300 – 21,012,401
Length 101
Max. P 0.703476
window13886

overview

Window 6

Location 21,012,300 – 21,012,401
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -20.20
Consensus MFE -19.06
Energy contribution -18.25
Covariance contribution -0.81
Combinations/Pair 1.14
Mean z-score -1.48
Structure conservation index 0.94
SVM decision value 0.36
SVM RNA-class probability 0.703476
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21012300 101 - 22224390
GCGCUCCGCAGUUGAUCAAUUUUUUACAUCUAUUGGCACUUACUUGCCGCGAUAUAUUAUAUAUUUAUGCCUCGUCCUGCUUGUGCAAAUCCAAUUACGUU
((((...((((.......................((((......))))((((((((.........))))..)))).))))..))))............... ( -18.10)
>DroSec_CAF1 94064 101 - 1
GCGCUCCGCAGUUGAUCAAUUUUUUAUAUCUAUUGGCACUUACUUGCCGCGAUAUAUUAUAUAUGUAUGCCUCGUCCUGCUUGUGCAAAUCCAAUUACGUU
((((...((((.(((...................((((......))))((.((((((.....)))))))).)))..))))..))))............... ( -21.10)
>DroEre_CAF1 34722 101 - 1
GCGCUGCGCAGUUGAUCAAUCUUUUAUAUCUAUUGGCACUUACUUGCCGCGAUGUAUUACACAUUUAUGCCUCACCCUGCUUGUGCAAAUCCAAUUACGUU
((((...((((.(((...................((((......))))(((((((.....)))))...)).)))..))))..))))............... ( -19.60)
>DroYak_CAF1 40697 101 - 1
GCGCUCCGCAGUUGAUCAAUUUUUUAUAUCUAUUGGCACUUACUUGCCGCGAUAUACUACAUAUUUAUGCCUCACCCUGCUUGCGCAAAUCCAAUUACGUU
((((...((((.(((.........((((((...(((((......))))).))))))...(((....)))..)))..))))..))))............... ( -22.00)
>consensus
GCGCUCCGCAGUUGAUCAAUUUUUUAUAUCUAUUGGCACUUACUUGCCGCGAUAUAUUACAUAUUUAUGCCUCACCCUGCUUGUGCAAAUCCAAUUACGUU
((((...((((.(((...................((((......))))(((((((.....))))...))).)))..))))..))))............... (-19.06 = -18.25 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:22 2006