| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,011,905 – 21,011,998 |
| Length | 93 |
| Max. P | 0.708649 |
| Location | 21,011,905 – 21,011,998 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 95.88 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.48 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21011905 93 - 22224390 ACUAUUCUUUAACAUGUGUAUUAUGUAGUUGUUGUUGCUGCUCUUAUUGUUGUGGCGCAAUAAAAAUGCUACAACUUAAUUAAUUAAGUGCAA ..............(((......((((((..(((((((.((((........).))))))))))....))))))((((((....))))))))). ( -19.70) >DroSec_CAF1 93689 93 - 1 ACUAUUCUUUAACAUGUGUAUUAUGUAGUUGUUGUUCCUGCUCUUAUUGUUGUGGGGCAAUAAAAAUGCUACAACUUAAUUAAUUAAGUGCAA ..............(((......(((((((((((((((.((.......))...))))))))).....))))))((((((....))))))))). ( -19.20) >DroEre_CAF1 34316 92 - 1 AAUAUUCCUA-ACAUGUGUAUUAUGUAGUUGUUGCUGCUGCUCUUAUUGUUGUGGCGCAAUAAAAAUGCUACAACUUAAUUAAUUAAGUGCAA ..........-...(((......((((((((((((.((..(..........)..)))))))).....))))))((((((....))))))))). ( -20.10) >DroYak_CAF1 40268 93 - 1 ACUAUUCUUAAACAUGUGUAUUAUGUAGUUGUUGUUGCUGCUCUUAUUGUUGUGGGGCAAUAAAAAUGCUACAACUUAAUUAAUUAAGUGCAA ..............(((......((((((..((((((((.(.(........).).))))))))....))))))((((((....))))))))). ( -21.30) >consensus ACUAUUCUUAAACAUGUGUAUUAUGUAGUUGUUGUUGCUGCUCUUAUUGUUGUGGCGCAAUAAAAAUGCUACAACUUAAUUAAUUAAGUGCAA ..............(((......((((((((((((.((..(..........)..)))))))).....))))))((((((....))))))))). (-17.66 = -17.48 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:22 2006