Locus 8451

Sequence ID X_DroMel_CAF1
Location 21,011,651 – 21,011,752
Length 101
Max. P 0.857925
window13884

overview

Window 4

Location 21,011,651 – 21,011,752
Length 101
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 77.73
Mean single sequence MFE -30.51
Consensus MFE -11.48
Energy contribution -13.68
Covariance contribution 2.20
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.38
SVM decision value 0.82
SVM RNA-class probability 0.857925
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21011651 101 + 22224390
GGGGGCGCUGCA-GCUACA--ACAAACUAUCAAAAUAAAUAACAGAACGUGACGGC-----AACGUAACGUG-----GCGCUCUGUGCCCCAGCCA-CGCCC--CCUUUGCCACACG
(((((((..((.-......--.........................((((.(((..-----..))).))))(-----((((...)))))...))..-)))))--))........... ( -34.90)
>DroSec_CAF1 93428 101 + 1
GGGGGCGCUGCA-GCUACA--ACUAACUAUCAAAAUAAAUAACAGAACGUGACGGC-----AACGUAACGUG-----GAGCUCUUUGCCCCAGCCA-CGCCC--CCUUUGCCACACG
(((((((..((.-......--.........................((((.(((..-----..))).))))(-----(.((.....)).)).))..-)))))--))........... ( -33.70)
>DroEre_CAF1 34057 100 + 1
GG-GGCGCUGCA-ACUACA--ACAAACUAUCAAAAUAAAUAACAGUACGUGACGGC-----AACGUAACGUG-----GCGCUCUGUGCCCCAGCCA-CGCCC--CUCUUGCCACACG
((-((((..((.-......--.........................((((.(((..-----..))).))))(-----((((...)))))...))..-)))))--)............ ( -31.50)
>DroWil_CAF1 48516 106 + 1
------GCUACACACUACAGACGAAACUAUCAGAAUAAAUAACAAAACGUGACGUCCUAGUAACGUAACGUGCCAUGGCUCACUUUCCGCCAACUGGCAACC--GAACUGGCA---A
------((((....................................((((.((((.......)))).))))((((((((.........))))..))))....--....)))).---. ( -20.90)
>DroYak_CAF1 39993 103 + 1
GGGGGCUCUGCA-GCUACA--ACAAACUAUCAAAAUAAAUAAGAGAACGUGACGGC-----AACGUUACGUG-----GUGCUCUGUGCCCCGGCCA-CUCCCCCCUUUUGCCACACG
.(((((.(.(((-.((((.--........((...........))....((((((..-----..)))))))))-----))))...).)))))(((..-............)))..... ( -31.54)
>consensus
GGGGGCGCUGCA_GCUACA__ACAAACUAUCAAAAUAAAUAACAGAACGUGACGGC_____AACGUAACGUG_____GCGCUCUGUGCCCCAGCCA_CGCCC__CCUUUGCCACACG
.(((((((.((................(((....))).........((((.(((.........))).))))........))...))))))).......................... (-11.48 = -13.68 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:21 2006