Locus 845

Sequence ID X_DroMel_CAF1
Location 2,403,710 – 2,403,815
Length 105
Max. P 0.716671
window1364

overview

Window 4

Location 2,403,710 – 2,403,815
Length 105
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 84.64
Mean single sequence MFE -21.05
Consensus MFE -13.93
Energy contribution -14.55
Covariance contribution 0.62
Combinations/Pair 1.24
Mean z-score -1.90
Structure conservation index 0.66
SVM decision value 0.39
SVM RNA-class probability 0.716671
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2403710 105 - 22224390
GAAACCAAAAAUGUGCUCGGAAAAUGUAAAAGUGAGUGCAAAAAACGAGGGCGGAAUGUAAAUGGGACAGGGA---UAUCUUCAUUGUUGUCAAAAGGAUAUAUGGAC
....(((....(((.((((.....((((........)))).....)))).)))..((((......(((((.((---(......))).)))))......)))).))).. ( -21.40)
>DroSec_CAF1 46575 96 - 1
GAAACCAAAAAUGUGCUCGGAAAAUGUAAAAGUGAGUGCAAA-AACGAGGGCGGAAUGUAAAUGGGGCAGGGA---UAUCUUCAUUCUUGUCGAAGGGAU--------
....((.....(((.((((.....((((........))))..-..)))).)))............((((((((---(......)))))))))...))...-------- ( -21.90)
>DroEre_CAF1 49521 96 - 1
GAAACCAAAAAUGUGCUUGGAAAAUGGAAAAGUGAGUGCAAA-AACGAGGGCGGAAUGUAAAUGGGACUGAGA---AAUCAUCAUCCUUUGCAAAGGGAU--------
....((.....(((.((((.....((.(........).))..-..)))).)))...((((((.(((..(((..---..)))...)))))))))..))...-------- ( -17.40)
>DroYak_CAF1 49402 99 - 1
GAAACCAAAAAUGUGCUUGGAAAAUGUAAAAGUGAGUGCAAA-AACGAGGGCGGAAUGUGCAUGGGAUGGGGAUGGGAUCUGCAUCCUUGUCAAAAGGAU--------
....((.....(((.((((.....((((........))))..-..)))).)))...((.(((.((((((.((((...)))).)))))))))))...))..-------- ( -23.50)
>consensus
GAAACCAAAAAUGUGCUCGGAAAAUGUAAAAGUGAGUGCAAA_AACGAGGGCGGAAUGUAAAUGGGACAGGGA___UAUCUUCAUCCUUGUCAAAAGGAU________
....((.....(((.((((.....((((........)))).....)))).)))............((((((((...........))))))))....)).......... (-13.93 = -14.55 +   0.62) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:10 2006