Locus 8446

Sequence ID X_DroMel_CAF1
Location 21,000,991 – 21,001,105
Length 114
Max. P 0.669763
window13876

overview

Window 6

Location 21,000,991 – 21,001,105
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -45.28
Consensus MFE -30.67
Energy contribution -30.79
Covariance contribution 0.12
Combinations/Pair 1.27
Mean z-score -1.74
Structure conservation index 0.68
SVM decision value 0.29
SVM RNA-class probability 0.669763
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21000991 114 - 22224390
----UCUAGUUUGAGUAGACGCAUUUGGCUAGAAACGGGACAAGUGCGCAUCAGUGGGGUCAGGUCCAGGGUCCAGACUGGCAAUUGCCUUG--UGUUUUGUGGCCGUGGAGCCCGCACG
----.......(((...(.((((((((.((.......)).))))))))).)))(((((((....((((.(((((((((.(((....)))...--.).)))).)))).)))))))).))). ( -40.80)
>DroSec_CAF1 82802 112 - 1
----CCUAGUUUGGGCAGACGCAUUUGGCUAGAACCAGGCCAAGUGCGCAUCAGUGGGGUCAGGUCCAGGGGU-UGACUGCC-UCUGCCGAG--UGUUUUGUGGCCGUGGAGCCCAAACU
----...(((((((((.(.(((((((((((.......))))))))))))........(((((((..(((((((-.....)))-))))))...--.......))))).....))))))))) ( -48.00)
>DroSim_CAF1 98385 112 - 1
----CCUAGUUUGGGCAGACGCAUUUGGCUAGAACCAGGCCAAGUGCGCAUCAGUGGGGUCAGGUCCAGGGGU-UGACUGCC-UCUGCCGAG--UGUUUUGUGGCCGUGGAGCCCAAACU
----...(((((((((.(.(((((((((((.......))))))))))))........(((((((..(((((((-.....)))-))))))...--.......))))).....))))))))) ( -48.00)
>DroYak_CAF1 29002 113 - 1
CUUUCCUAAUUUGGGAAAACAUAUUUGGCUAGAACCAGGCCGAGUGCGCAUCUCUGGGG-----UCCAGGGGU-CGACUGCC-UUUGCCGAGUGUGUUUUGUGGUCGUGGAGUCCACAGA
.((((((.....))))))(((((((((((.......((((..(((.((.((((((((..-----.))))))))-))))))))-)..)))))))))))(((((((.(.....).))))))) ( -44.30)
>consensus
____CCUAGUUUGGGCAGACGCAUUUGGCUAGAACCAGGCCAAGUGCGCAUCAGUGGGGUCAGGUCCAGGGGU_UGACUGCC_UCUGCCGAG__UGUUUUGUGGCCGUGGAGCCCAAACU
........((((((((...(((((((((((.......)))))))))))................((((.((((......)))....(((.............)))).)))))))))))). (-30.67 = -30.79 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:13 2006