Locus 8445

Sequence ID X_DroMel_CAF1
Location 21,000,028 – 21,000,120
Length 92
Max. P 0.831431
window13875

overview

Window 5

Location 21,000,028 – 21,000,120
Length 92
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 79.70
Mean single sequence MFE -25.63
Consensus MFE -18.21
Energy contribution -18.25
Covariance contribution 0.04
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.71
SVM decision value 0.72
SVM RNA-class probability 0.831431
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21000028 92 - 22224390
AAUAAAUAACAUUUCGCAGGGCUUCCUGCCUGCUU----GCUGGCUGCAGU-UGCUCCUUUUUGGCCAGCUCCUUCCUUCCAGAUCCAGACAGUA---------------------AA
...............(((((.(.....))))))..----(((((((((...-.))........))))))).........................---------------------.. ( -20.40)
>DroSec_CAF1 81890 88 - 1
UAUAAAUAACAUUUCGCAGGGCUUCCUGCCUGCUA----GCUGGCUGCUGU-UGCUCCUUUUUGGCCAGCUCC----UUCCAGAUCCAGACAGUG---------------------AA
.........(((((((((((....)))))(((..(----(((((((((...-.))........))))))))..----...))).....)).))))---------------------.. ( -24.40)
>DroSim_CAF1 97463 88 - 1
UAUAAAUAACAUUUCGCAGGGCUUCCUGUCUGCUA----GCUGGCUGCUGU-UGCUCCUUUUUGGCCAGCUCC----UUCCAGAUCCAGACAGUG---------------------AA
............((((((((....)))(((((...----.((((..(..((-((..((.....)).))))..)----..))))...))))).)))---------------------)) ( -24.20)
>DroEre_CAF1 23612 89 - 1
AAUAAAUAACAUUUCGCAGGGCUUCCUGCCUGCUG----GCUGGCUGCUCCUCUCUCCUUUCUGGCCAGCUCC----UUCCAGAUCCUGACAGCA---------------------GA
...............(((((....)))))((((((----(((((((.................)))))))...----...(((...))).)))))---------------------). ( -29.13)
>DroYak_CAF1 28019 113 - 1
AAUAAAUAACAUUUCGCAGGGCUUCCUGCCUGCUGUCUGGCUGGCUGCUGU-UGCUUCUUUCUGGCCUGCUCC----UUCCAGAUGCUGACAGCCUCCUGACUCAUCCACAGCCCCUA
..................(((((....(((.(((....))).))).(((((-(((.....(((((........----..))))).)).))))))................)))))... ( -30.00)
>consensus
AAUAAAUAACAUUUCGCAGGGCUUCCUGCCUGCUA____GCUGGCUGCUGU_UGCUCCUUUUUGGCCAGCUCC____UUCCAGAUCCAGACAGUA_____________________AA
...............(((((.(.....))))))......(((((((.................)))))))................................................ (-18.21 = -18.25 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:12 2006