Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,999,416 – 20,999,526 |
Length | 110 |
Max. P | 0.563966 |
Location | 20,999,416 – 20,999,526 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 92.19 |
Mean single sequence MFE | -19.96 |
Consensus MFE | -15.88 |
Energy contribution | -16.12 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.80 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20999416 110 + 22224390 AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACACAUACAUAUACGGCAAAAUCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCAACUGCAGACCCUCUUA ...............(((((((.........)))))))............................(((((((((..(((....)))..)).)))))))........... ( -18.00) >DroSec_CAF1 81284 106 + 1 AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACGC----AUAUACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCGACUGCAGACCCUCUUA ...............(((((((.........)))))))....(((----.............))).(((((((((..(((....)))..)).)))))))........... ( -19.82) >DroSim_CAF1 96849 106 + 1 AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACAC----AUAUACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCGACUGCAGACCCUCUUA ..((...........(((((((.........))))))).......----.......((....))))(((((((((..(((....)))..)).)))))))........... ( -19.10) >DroEre_CAF1 22898 104 + 1 AAUCGUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCACACAC----ACACACG-CAAAAGCGAGCAGUUGCGCAUCCUGCAGAUGCCUCCGACUGCAGAUCC-CCUA .(((...........(((((((.........))))))).......----.....((-(....))).(((((((.(((((.....)))))...))))))).)))..-.... ( -22.10) >DroYak_CAF1 27275 105 + 1 AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACAC----AUACACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUUCGACUGCAGACUC-CUUA ..((...........(((((((.........))))))).......----.......((....))))((((((((((.(((....)))))..))))))))......-.... ( -20.80) >consensus AAUCAUAUAAAAUAUCAAUAAAGCACACAAAUUUAUUGCAGACAC____AUAUACGGCAAAAGCGAGCAGUUGAGCAUCCUGCAGGAGCCUCCGACUGCAGACCCUCUUA ..((...........(((((((.........)))))))............................(((((((.((.(((....)))))...))))))).))........ (-15.88 = -16.12 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:11 2006