Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,994,607 – 20,994,721 |
Length | 114 |
Max. P | 0.997829 |
Location | 20,994,607 – 20,994,721 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.50 |
Mean single sequence MFE | -28.53 |
Consensus MFE | -17.34 |
Energy contribution | -18.07 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.08 |
Mean z-score | -2.84 |
Structure conservation index | 0.61 |
SVM decision value | 2.94 |
SVM RNA-class probability | 0.997829 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20994607 114 - 22224390 CUCCAAACUCUCUUCUCUGCGCUGCCGUUACUACGCUCUUAUUUGUUGCUUAACUGGCAACAGGCAGGCCCUUCUUCCGCAGUUGACAUCUGCAU------UUGUGCGGAGUUUUAACAC ..............((((((((((((((....)).........(((((((.....)))))))))))............((((.......))))..------..))))))))......... ( -32.20) >DroSec_CAF1 76183 109 - 1 CUCCAAACUCUCUUUUUCGCACUGCG-----AACGCUCUUAUUUGUUGCGUAACGGGCAAUAAUCAGGCCCUUCUUCCGCAGUUGACAUAUGCAU------UAGUGCGGAGUUUUAACUU ((((............(((.((((((-----.((((...........))))...((((.........))))......))))))))).....(((.------...)))))))......... ( -28.90) >DroSim_CAF1 87012 99 - 1 CUCCAAACUCUCUUUUUCGCACUGCG-----UACGCUCUUAUUUGUUGCGUAA----------------CCUUCUUCCGCAGUUGACAUCUGCAUUAAUAUUAGUGCAGAGUUUUAACUC ....((((........(((.((((((-----(((((...........))))).----------------........)))))))))..(((((((((....)))))))))))))...... ( -24.50) >consensus CUCCAAACUCUCUUUUUCGCACUGCG_____UACGCUCUUAUUUGUUGCGUAAC_GGCAA_A__CAGGCCCUUCUUCCGCAGUUGACAUCUGCAU______UAGUGCGGAGUUUUAACUC ....(((((((.........(((((......(((((...........)))))...(((.........)))........)))))........((((........)))))))))))...... (-17.34 = -18.07 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:10 2006