Locus 8442

Sequence ID X_DroMel_CAF1
Location 20,994,029 – 20,994,125
Length 96
Max. P 0.574234
window13872

overview

Window 2

Location 20,994,029 – 20,994,125
Length 96
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.49
Mean single sequence MFE -27.43
Consensus MFE -13.29
Energy contribution -15.07
Covariance contribution 1.78
Combinations/Pair 1.10
Mean z-score -2.03
Structure conservation index 0.48
SVM decision value 0.08
SVM RNA-class probability 0.574234
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20994029 96 + 22224390
-------AUGCC------UGUGUGCAUGUGUUCGAGUGUCCUGCACGGACUGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC
-------.((.(------(((((...(((((..(.....)..)))))..((((((((.(((...........))).)))))))))))))).))..-.............. ( -23.10)
>DroSec_CAF1 75656 94 + 1
-------AUGUC------UGU--GUAUGUGUUCGAGUGUCCUGCACGGACUGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC
-------.((((------(((--((.(((((..(.....)..)))))..((((((((.(((...........))).)))))))))))))))))..-.............. ( -28.10)
>DroSim_CAF1 86490 96 + 1
-------AUGUC------UGUGUGUAUGUGUCCGAGUGUCCUGCACGGACAGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC
-------.((((------(((((.(...((((((.((.....)).))))))((((((.(((...........))).))))))).)))))))))..-.............. ( -30.70)
>DroEre_CAF1 17901 101 + 1
UGUACAUGCAUCAG--------UGUGUGUGCUCGAGUGUCCUGCAAGGACUGCUAGUUGCAGAGCCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC
.(((((((((....--------)))))))))(((.(((((.((((.((.((((.....))))..))))))..(((.....))))))))...))).-.............. ( -28.80)
>DroWil_CAF1 20373 84 + 1
-----CUCUCUC------UGUGUGUCUAUGU---------------UGGCUGCUUGUUACUGUCCCUGUAAAUGUCAUUGGCAGACACAUAGGAAAAAUAUUUUAAUAAC
-----...((.(------(((((((((..((---------------..(..((...((((.......))))..))..)..))))))))))))))................ ( -21.60)
>DroYak_CAF1 19825 106 + 1
---ACAUGUGUCAGAGUGUGUGUGUGUGUGUGCGAGUGUCCUGCACGGACCGCUAGUUGCAGAGCCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC
---.....(((.(((((((.(((.(((((.(((.((((.(.((((.((..(((.....)).)..))))))...).)))).))).))))).)))..-.))))))).))).. ( -32.30)
>consensus
_______AUGUC______UGUGUGUAUGUGUUCGAGUGUCCUGCACGGACUGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA_AAUAUUUUAAUAAC
.......................((.((((((.....((((.....)))).((((((.(((...........))).)))))).)))))).)).................. (-13.29 = -15.07 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:09 2006