Locus 8441

Sequence ID	X_DroMel_CAF1
Location	20,993,170 – 20,993,268
Length	98
Max. P	0.984266

overview

Window 0

Location	20,993,170 – 20,993,268
Length	98
Sequences	3
Columns	102
Reading direction	forward
Mean pairwise identity	96.73
Mean single sequence MFE	-24.63
Consensus MFE	-23.13
Energy contribution	-24.47
Covariance contribution	1.33
Combinations/Pair	1.00
Mean z-score	-3.57
Structure conservation index	0.94
SVM decision value	1.97
SVM RNA-class probability	0.984266
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20993170 98 + 22224390
----UGUGUUUAUGCAGCAAUAACUGUAAAUGACAAACAAAUGCGCACGUUAAAAUCGUUGAUUAAAAUCAGCAUAAACACACACAGGACAAAGGCUAAAAU
----(((((((((((.....(((((((..((.........))..))).)))).......((((....))))))))))))))).................... ( -18.70)
>DroSec_CAF1 74728 102 + 1
UGUGUGUGUUUAUGCAGCAAUAACUGUAAAUGACAAACAAAUGCGCACGUUAAAAUCGUUGAUUAAAAUCAGCAUAAACACACACAGGACAAAGGCUGAAAU
(((((((((((((((.....(((((((..((.........))..))).)))).......((((....)))))))))))))))))))................ ( -27.60)
>DroSim_CAF1 85546 102 + 1
UGUGUGUGUUUAUGCAGCAAUAACUGUAAAUGACAAACAAAUGCGCACGUUAAAAUCGUUGAUUAAAAUCAGCAUAAACACACACAGGACAAAGGCUGAAAU
(((((((((((((((.....(((((((..((.........))..))).)))).......((((....)))))))))))))))))))................ ( -27.60)
>consensus
UGUGUGUGUUUAUGCAGCAAUAACUGUAAAUGACAAACAAAUGCGCACGUUAAAAUCGUUGAUUAAAAUCAGCAUAAACACACACAGGACAAAGGCUGAAAU
(((((((((((((((.....(((((((..((.........))..))).)))).......((((....)))))))))))))))))))................ (-23.13 = -24.47 +   1.33)

alignment

secondary structure

dotplot

Window 1

Location	20,993,170 – 20,993,268
Length	98
Sequences	3
Columns	102
Reading direction	reverse
Mean pairwise identity	96.73
Mean single sequence MFE	-24.37
Consensus MFE	-23.30
Energy contribution	-24.30
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-2.78
Structure conservation index	0.96
SVM decision value	1.79
SVM RNA-class probability	0.977259
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20993170 98 - 22224390
AUUUUAGCCUUUGUCCUGUGUGUGUUUAUGCUGAUUUUAAUCAACGAUUUUAACGUGCGCAUUUGUUUGUCAUUUACAGUUAUUGCUGCAUAAACACA----
....................(((((((((((((((....))))...............(((.....((((.....))))....))).)))))))))))---- ( -18.70)
>DroSec_CAF1 74728 102 - 1
AUUUCAGCCUUUGUCCUGUGUGUGUUUAUGCUGAUUUUAAUCAACGAUUUUAACGUGCGCAUUUGUUUGUCAUUUACAGUUAUUGCUGCAUAAACACACACA
.................((((((((((((((((((....))))...............(((.....((((.....))))....))).)))))))))))))). ( -27.20)
>DroSim_CAF1 85546 102 - 1
AUUUCAGCCUUUGUCCUGUGUGUGUUUAUGCUGAUUUUAAUCAACGAUUUUAACGUGCGCAUUUGUUUGUCAUUUACAGUUAUUGCUGCAUAAACACACACA
.................((((((((((((((((((....))))...............(((.....((((.....))))....))).)))))))))))))). ( -27.20)
>consensus
AUUUCAGCCUUUGUCCUGUGUGUGUUUAUGCUGAUUUUAAUCAACGAUUUUAACGUGCGCAUUUGUUUGUCAUUUACAGUUAUUGCUGCAUAAACACACACA
.................((((((((((((((((((....))))...............(((.....((((.....))))....))).)))))))))))))). (-23.30 = -24.30 +   1.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:08 2006