Locus 8440

Sequence ID X_DroMel_CAF1
Location 20,991,416 – 20,991,522
Length 106
Max. P 0.688281
window13869

overview

Window 9

Location 20,991,416 – 20,991,522
Length 106
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 92.05
Mean single sequence MFE -24.30
Consensus MFE -20.11
Energy contribution -19.99
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.83
SVM decision value 0.32
SVM RNA-class probability 0.688281
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20991416 106 - 22224390
UGUGU---------UUUUGUCGGCCGGUUCUUAUACGUUUUAUUGUUGCUAAAAAUUUACGCCAUGAGCAAUAAAAUAUUUUAAUGGCCACAUAAAAUGCUGCAGCAUUUGUAAA
.....---------...(((.(((((((......))((((((((((((((((....))).))....))))))))))).......))))))))..((((((....))))))..... ( -22.20)
>DroSec_CAF1 72959 106 - 1
UGUGU---------UUUGGUCGGCCGGUUCUUAUACGUUUUAUUGUUGCUUAAAAUUUACGCCAUGAGCAAUAAAAUAUUUUAAUGGCCACAUAAAAUGCUGCAGCAUUUGUAAA
.((((---------((((((.(((((((......))......((((((((((............))))))))))..........))))))).))))))))(((((...))))).. ( -22.70)
>DroSim_CAF1 83754 106 - 1
UGUGU---------UUUUGUCGGCCGGUUCUUAUACGUUUUAUUGUUGCUUAAAAUUUACGCCAUGAGCAAUAAAAUAUUUUAAUGGCCACAUAAAAUGCUGCAGCAUUUGUAAA
.....---------...(((.(((((((......))......((((((((((............))))))))))..........))))))))..((((((....))))))..... ( -22.90)
>DroEre_CAF1 15562 113 - 1
UGUGUUUUUG-CGUUUUUGUCGGCCG-UUCUUAUGCGUUUUAUUGUUGCUUAAAAUUUACGCCAUGGACAAUAAAAUAUUUUAAUGGCCACAUAAAAUGCUGCAGCAUUUGUAAA
.(((((...(-(((((((((.(((((-((.......(((((((((((((.((.....)).))....))))))))))).....)))))))))).)))))))...)))))....... ( -28.80)
>DroYak_CAF1 17509 115 - 1
ACUGUUUUUGGGGUUUUUGUCGGCCGGUUCUUAUACGUUUCAUUGUUGCUUAAAAUUUACGCCAUGAGCAAUAAAAUAUUUUAAUGGCCACAUAAAAUGCUGCAGCAUUUGUAAA
.((((....((.((((((((.(((((((......))......((((((((((............))))))))))..........)))))))).))))).)))))).......... ( -24.90)
>consensus
UGUGU_________UUUUGUCGGCCGGUUCUUAUACGUUUUAUUGUUGCUUAAAAUUUACGCCAUGAGCAAUAAAAUAUUUUAAUGGCCACAUAAAAUGCUGCAGCAUUUGUAAA
..................((.(((((..........(((((((((((((...........))....))))))))))).......)))))))...((((((....))))))..... (-20.11 = -19.99 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:06 2006