Locus 8438

Sequence ID X_DroMel_CAF1
Location 20,952,011 – 20,952,129
Length 118
Max. P 0.618535
window13864

overview

Window 4

Location 20,952,011 – 20,952,129
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.32
Mean single sequence MFE -26.02
Consensus MFE -18.92
Energy contribution -20.18
Covariance contribution 1.25
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.73
SVM decision value 0.17
SVM RNA-class probability 0.618535
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20952011 118 - 22224390
AGUUGCAUUAGCCAGCUUUAACCGUAAUUGCGCACAUUAUGUUCGUAGCGAAUUUAAUGUUUAAUUAUAUUUUAGUAACCUGCAUAAUGUGCAUAAUAAA--AUAGGGGCUUUCUGUCCU
((((((....).))))).........((((.(((((((((((..((.((((((.((((.....)))).))))..)).))..))))))))))).))))...--...(((((.....))))) ( -28.40)
>DroSec_CAF1 62935 119 - 1
AGUUGCAUUUUGCAGCUUUAACCGUAAUUGGGCACAUUAUGUUCGUAGCGAAUUUAA-GUUUAAUUAUAUUUUAGGCACCUGCAUAAGUCGCAUAAUAAAAAAAAGGGGUUUUCUGUCCU
((((((.....))))))..((((((((((((((...(((.(((((...))))).)))-)))))))))).(((((.((..((.....))..))....)))))......))))......... ( -22.20)
>DroEre_CAF1 8291 100 - 1
AGUUGCAUUAUGCAGCUUUAACCGUAAUUGGGCGCAUUAUGUACCUAGCGCGUUUAAUGUUUCAUUAUAUUUUAGUCAGCCGCAUGAUGCGCA---UAAGA--UG---------------
((((((.....))))))....(((....)))(((((((((((..((..(.....(((((...))))).......)..))..))))))))))).---.....--..--------------- ( -28.90)
>DroYak_CAF1 8340 103 - 1
AGUUGCAUUAUGCAGCUUUAACCGUAAUUGGGCACAUUAUGCACCUAGCGAGUUUAAUGUUUCAUUAUAUUUUAGUCACCCGCAUAAUGCGCAUGAUAAGA--UC---------------
.((.(((((((((.(((....(((....)))(((.....)))....)))((.(..(((((......)))))..).))....))))))))))).........--..--------------- ( -24.60)
>consensus
AGUUGCAUUAUGCAGCUUUAACCGUAAUUGGGCACAUUAUGUACCUAGCGAAUUUAAUGUUUAAUUAUAUUUUAGUCACCCGCAUAAUGCGCAUAAUAAAA__UA_______________
((((((.....))))))....(((....)))(((((((((((..((..(......(((((......)))))...)..))..)))))))))))............................ (-18.92 = -20.18 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:02 2006