| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,948,137 – 20,948,231 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 20,948,137 – 20,948,231 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 82.06 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -20.75 |
| Energy contribution | -20.83 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20948137 94 + 22224390 CAAACCGCUCAGUUUUUGUCACACGAGAGGGCAACCAGCUUCUCCGAGAAACUGUAUCCACAGCUAAGAACCUCAUGUGACCAUCUGGGCGAGU ...(((((((((.....((((((.(((.((....))...((((...((...((((....)))))).)))).))).))))))...))))))).)) ( -30.70) >DroSec_CAF1 5484 94 + 1 CAAACCACUCAGUUUUUGUCACAGGAAAGGGCAACCAGCUUCUCCGAGAAACUGUAUCCACAGCUAAGAACCUCAUGUGACCAUAUGGGAGAGU ......((((.(((((((.(...(((..((....))((.(((.....))).))...)))...).)))))))(((((((....))))))).)))) ( -21.90) >DroSim_CAF1 6658 94 + 1 CAAACCACUCAGUUUUUGUCACAGGAAAGGGCAACCAGCUUCUCCGAGAAACUGUAUCCACAGCUAAGAACCUCAUGUGACCAUCUGGGAGAGU .......(((((.....((((((.((..((....)).(.((((...((...((((....)))))).)))).))).))))))...)))))..... ( -22.10) >DroEre_CAF1 4838 94 + 1 CAAACCGCUCAGUUUGUGUCGCAGGAGAGGGCGACCAGUUUCUCCGAGAAACUGUAUCCUCAGCUAAGAACCGCGUGUGACCACCUGGGUGAGU ...(((((((((..((.((((((...(((((....(((((((.....)))))))..))))).((........)).)))))))).))))))).)) ( -33.60) >DroYak_CAF1 4966 94 + 1 CAAAGCGUUCAGUUUUUGUCGCAGGAGAGGGCGACCAGCUUCUCCGAGAAACUGUAUCCACAGCUAAGAACCUCGUGUGACCAUUUGGGUGAUU .....((..(((.....(((((((((((((.(.....))))))))(((...((((....))))........))).))))))...)))..))... ( -25.20) >DroAna_CAF1 4810 94 + 1 AAGAGUGCCGAGUUCCUGUCCCAGGAGGUGGCCACAAAGUUCACCGCGAAGCUGUAUCCGCAUCUGAAGGACUCGUGCGAGUCCUUCGGCGAGU ....((((((..((((((...)))))).))).)))....(((.(((((..........)))....(((((((((....))))))))))).))). ( -36.10) >consensus CAAACCGCUCAGUUUUUGUCACAGGAGAGGGCAACCAGCUUCUCCGAGAAACUGUAUCCACAGCUAAGAACCUCAUGUGACCAUCUGGGAGAGU .....(((((((.....((((((.(((.((....))...............(((......)))........))).))))))...)))))))... (-20.75 = -20.83 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:01 2006