Locus 8433

Sequence ID X_DroMel_CAF1
Location 20,938,242 – 20,938,340
Length 98
Max. P 0.733618
window13853

overview

Window 3

Location 20,938,242 – 20,938,340
Length 98
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -29.99
Consensus MFE -22.00
Energy contribution -22.92
Covariance contribution 0.92
Combinations/Pair 1.25
Mean z-score -1.65
Structure conservation index 0.73
SVM decision value 0.43
SVM RNA-class probability 0.733618
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20938242 98 + 22224390
----------CAGGGAGACGGCUCAGGUGGGUCAAGUUCUCAUCUGAAUUAGUGCGUCUGUCAGUUGAGGACAGCUGAGAUGUACAUGUAUGCAAAUGGAAUGGAAGU
----------...(....).(((((((((((.......)))))))))....(((((((..(((((((....))))))))))))))......))............... ( -31.20)
>DroSec_CAF1 10463 98 + 1
----------CAGGGAGACGGCGCAGGUGGGUCAAGUUCUCAUCUGAAUUAGUGCGUCUGUCAGUCGAGGACAGCUGAGAUGUACUUAUAUGCAAAUGGAAUGGAAGU
----------...(....).(((((((((((.......))))))))....((((((((..(((((........)))))))))))))....)))............... ( -26.60)
>DroEre_CAF1 8913 94 + 1
----------CAGGGAGACGGCGCAGGUGGGUCAAGUUCCCACCUGAAUUAGUGCGUCUGUCAGUUGAGGACAGCUGUGAUGUA----UAUGCAAAUGGAAUGGAAGU
----------...(....).(((((((((((.......)))))))).....(((((((...((((((....)))))).))))))----).)))............... ( -33.20)
>DroYak_CAF1 10028 95 + 1
----------U-UAGAGACGGCGCAGGUGGGUCAAGUUCUCACCUGAAUUAGUGCGUCUGGCAGUUGAGGACAACUGUGAUGUACA--UAUGCAAAUGAAAUGGAAGU
----------.-........(((((((((((.......)))))))).....(((((((..(((((((....)))))))))))))).--..)))............... ( -31.40)
>DroAna_CAF1 11140 104 + 1
UACUACCUGGCCGAAAGGGGACCAAGGUGGGUCGAGCUCCCCUCUUAAUUAGUGCAGCUGUCAGUUGAGGCCAGCGAUGAUGGA----UAUGCAAAUGGAAUAGAACC
..((((((((((....))...)).))))))............(((.......((((.((((((((((....))))..)))))).----..))))........)))... ( -27.56)
>consensus
__________CAGGGAGACGGCGCAGGUGGGUCAAGUUCUCAUCUGAAUUAGUGCGUCUGUCAGUUGAGGACAGCUGUGAUGUAC___UAUGCAAAUGGAAUGGAAGU
....................((.((((((((.......)))))))).....(((((((..(((((((....))))))))))))))......))............... (-22.00 = -22.92 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:52 2006