| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,935,865 – 20,935,982 |
| Length | 117 |
| Max. P | 0.867919 |
| Location | 20,935,865 – 20,935,982 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 68.36 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -14.30 |
| Energy contribution | -16.37 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20935865 117 + 22224390 GCAGGUGUGUAAGCAUCUCAGAUGCACUUGGAUAUAUGUACAUAUGUACAUACAUAUAUUGGUAGUAUCUUUGGAAAUGUGAUGAAUGAUAAUUUCAAAAAAACUCUG-GUAUUUUCA .(((((((((...........)))))))))....(((((((....)))))))...((((..(.(((.(.(((((((.(((........))).))))))).).))))..-))))..... ( -24.90) >DroSec_CAF1 8119 118 + 1 GCAUGUGUGUAAGCAUAUCAGAUGCACUUGAAUAUAUGUACAUACACAUGUACAUAUAUUGGUAGUAUCUCUGAAAAUGUGAAGAAAGAUAUUUUCAAAGCAGCUGUGGGUAUUUUAU ((((((((....)))))).(((((((((..(((((((((((((....)))))))))))))))).)))))).(((((((((........)))))))))..))................. ( -31.70) >DroYak_CAF1 7865 95 + 1 GCAGGUGUGUAAGCGCCUCAGAUGCACUUCGAUAUCU--------------------UGUGGAUGUAUCUCUGAGAAUGUGAUGGAAACUAC--GCAAAACAGAUG-GUGUAUUUUGU (.((((((....)))))))(((((((((...(((((.--------------------....)))))...((((....((((..(....)..)--)))...)))).)-))))))))... ( -25.80) >consensus GCAGGUGUGUAAGCAUCUCAGAUGCACUUGGAUAUAUGUACAUA___A__UACAUAUAUUGGUAGUAUCUCUGAAAAUGUGAUGAAAGAUAAUUUCAAAACAGCUGUG_GUAUUUUAU (.((((((....)))))))((((((...(.(((((((((((((....))))))))))))).)..))))))................................................ (-14.30 = -16.37 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:51 2006