Locus 8429

Sequence ID X_DroMel_CAF1
Location 20,922,294 – 20,922,401
Length 107
Max. P 0.577475
window13847

overview

Window 7

Location 20,922,294 – 20,922,401
Length 107
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -37.62
Consensus MFE -26.86
Energy contribution -28.81
Covariance contribution 1.95
Combinations/Pair 1.28
Mean z-score -1.01
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.577475
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20922294 107 - 22224390
GUUCAUCAUUUGGAUGUCUCCACUUCCAGUUCUUCGCAAAGCACUUUGCCCG------GGAGAUCGUCGGGCGAAGCUUUCGAGGAUUUGGUCAUGAGCGCCGUGGCGGAUGG
((((((....((((....))))...((((.((((((.(((((..((((((((------((....).)))))))))))))))))))).))))..))))))((....))...... ( -40.90)
>DroSec_CAF1 2695 107 - 1
GUUCAUCAUUUGGAUGUCUCCACUUCCAGUUCCUCGCAAAGCACUUUGCCCG------GAAGAUCGUCGGGCGAAGCUUUCGAGGAUUUGGUCAUGAGCGCCGUGGCGGAUGG
((((((....((((....))))...((((.((((((.(((((..((((((((------(.......)))))))))))))))))))).))))..))))))((....))...... ( -43.20)
>DroSim_CAF1 2703 107 - 1
GUUCAUCAUUUGGAUGUCUCCACUUCCAGUUCUUCGCAAAGCACUUUGCCCC------GAAGAUCGUCGGGCGAAGCUUUCGAGGAUUUGGUCAUGAGCGCCGUGGCGGAUGG
((((((....((((....))))...((((.((((((.(((((..((((((((------(.....))..)))))))))))))))))).))))..))))))((....))...... ( -38.30)
>DroEre_CAF1 2819 107 - 1
GCUCAUCCUUUGGAUUCCUACACAUCCAGCUCCUCGCAAAGCACUUUGCCCG------GAAGAUCGCCGGGCGAAGCUUUCCAGGAUUUGGUCACGAGCGCCGUGGCAGAUGG
((((((((...))))..........((((.((((.(.(((((..((((((((------(.......))))))))))))))).)))).))))....))))((....))...... ( -39.70)
>DroYak_CAF1 2787 113 - 1
CUUCAUCAUCUGGAUGUGUCCACUUCCAGCUCUUCGCAAAGCCCAUCACCGGGAGGGGGAAGAUCGCCGGGCGAAGCUUUCGAGGAUUUGGUCACAAGUGCCGUGACGGAUGG
...((((..(((((.((....)).))))).((((((.(((((((....((....)).))....((((...)))).)))))))))))....(((((.......))))).)))). ( -37.50)
>DroAna_CAF1 2349 103 - 1
GCCCUCCACCUGGACAUCUCCACCUCCAGCUCCACGCCGAGCAGUUUCGCCA------GCAAAUCGCCAGCCCUUGUGUUCCAGGACCUAGUGGCGGAUGCCGUAAUCG----
(((((...(((((((((...........((((......))))......((..------((.....))..))....))).))))))....)).))).(((......))).---- ( -26.10)
>consensus
GUUCAUCAUUUGGAUGUCUCCACUUCCAGCUCCUCGCAAAGCACUUUGCCCG______GAAGAUCGCCGGGCGAAGCUUUCGAGGAUUUGGUCACGAGCGCCGUGGCGGAUGG
...((((..(((((.((....)).))))).((((((.(((((..((((((((...............)))))))))))))))))))....((((((.....)))))).)))). (-26.86 = -28.81 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:47 2006