Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,919,538 – 20,919,643 |
Length | 105 |
Max. P | 0.638895 |
Location | 20,919,538 – 20,919,643 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.20 |
Mean single sequence MFE | -29.75 |
Consensus MFE | -22.33 |
Energy contribution | -22.72 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.09 |
Mean z-score | -1.53 |
Structure conservation index | 0.75 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20919538 105 + 22224390 CCAUACGUACAUUUCCCUCCAGCGCUUGCCCUGUUUUAGUGUGGCAAACAUCCACGCCAAGUUAAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA .......................(((.(((((.((((((..((((..........))))..)))))).))))).)---))..(((((..(((.....))).))))).. ( -31.90) >DroPse_CAF1 1 86 + 1 ----------------------CGCCUGCCCUGCUUCAAUGUGGCCAACAUCCAUGCCAAGAUCAAGGAGGGCCAGCAGCAUCCACUGAGUCACUCCUACAAGCGAUA ----------------------.((..(((((.(((.....((((..........)))).....))).)))))..))............(((.((......)).))). ( -22.20) >DroSec_CAF1 1 83 + 1 ----------------------CGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA ----------------------.(((.(((((.(((.((..(((((........)))))..)).))).))))).)---))..(((((..(((.....))).))))).. ( -30.90) >DroSim_CAF1 1 91 + 1 --------------CCCUCCAGCGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA --------------.........(((.(((((.(((.((..(((((........)))))..)).))).))))).)---))..(((((..(((.....))).))))).. ( -30.90) >DroEre_CAF1 1 83 + 1 ----------------------CGCCUGCCCUGUUUCAGCGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGCGAUUCCUACAAGCGGUA ----------------------.((..(((((.(((.(((.(((((........))))).))).))).)))))..---))..(((((.((......))...))))).. ( -30.20) >DroYak_CAF1 1 94 + 1 -----------UUACCCCGCAGCGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA---GCAUCCGUUGAGUGAUUCCUACAAGCGGUA -----------.....((((...(((.(((((.(((.((..(((((........)))))..)).))).))))).)---)).........(((.....)))..)))).. ( -32.40) >consensus ______________________CGCUUGCCCUGUUUUAGUGUGGCGAACAUCCACGCCAAGUUCAAGGAGGGCCA___GCAUCCGUUGAGUGAUUCCUACAAGCGGUA .......................((..(((((.(((.....(((((........))))).....))).))))).....))..(((((.((......))...))))).. (-22.33 = -22.72 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:44 2006