Locus 8425

Sequence ID	X_DroMel_CAF1
Location	20,914,031 – 20,914,137
Length	106
Max. P	0.697461

overview

Window 2

Location	20,914,031 – 20,914,137
Length	106
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	75.24
Mean single sequence MFE	-22.71
Consensus MFE	-5.50
Energy contribution	-5.67
Covariance contribution	0.17
Combinations/Pair	1.42
Mean z-score	-2.68
Structure conservation index	0.24
SVM decision value	0.34
SVM RNA-class probability	0.697461
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20914031 106 - 22224390
CACGCAAUGAUGUGCAAAUAAAUGUUGGCACCCAAAAACGAGGAGUGC---AAAUAAAAUUGUUGGCGCUGA-AAAAUGUGCGAAAAAAGAAGCAGU-------GAAAAUGCAAAAA---
..((((.....((((.(((((.((((.((((((........)).))))---.))))...))))).))))...-......)))).........(((..-------.....))).....--- ( -23.24)
>DroSec_CAF1 2005 104 - 1
CACGCAAUGAUAUGCAAAUAAAUAUUGGCACCCAAAAACGAGGAGCGC---ACAUAAAAUUGUUGGCGCUGA-AAAAUGUGCGAAAAA--AAGCAGU-------GAAAAUGCGAAAA---
..((((..(((((........))))).((((((........))(((((---(((......)))..)))))..-.....))))......--.......-------.....))))....--- ( -21.30)
>DroEre_CAF1 1977 105 - 1
CACGCAAUGAUAUGCAAAUAAAUGUCGUCACCCAAAAACGAGGAGCGC---AAAUAAAAUUGUUGGCGCUGA-AAAAUGUGC-AAAAAAGAAGCAGU-------GAAAAUGCGAAAA---
..((((.((((((........))))))((((((........))(((((---.((((....)))).)))))..-......(((-.........)))))-------))...))))....--- ( -22.70)
>DroYak_CAF1 2375 106 - 1
CACGCAAUGAUAUGCAAAUAAAUGUUGUCACCCAAAAACGAGGAGCGC---AAAUAAAAUUGUUGGCGCUGA-AAAAUGUGCGAAAAAAGAAGCAGU-------GAAAAUGCGAAAA---
..((((..(((((........))))).((((((........))(((((---.((((....)))).)))))..-......(((..........)))))-------))...))))....--- ( -20.80)
>DroAna_CAF1 2030 119 - 1
CUCAGUGUGAUAUGCAAAUAAAUGUCGCCACCGCCAUUCGCCAAACGCAGAAAAUAAAAUUGUUGGCGCUGA-AAAAUAUGCCAAAAAAAAAAAAAUUCGAAAAAAAAAUGCGAAAAGGG
....(.(((((((........)))))))).((....(((((........(((..........((((((....-......))))))...........)))...........)))))..)). ( -18.91)
>DroPer_CAF1 6599 90 - 1
CUGCCAGGGAUAUGCAAAUAAAUCUCG-----CAAAAAUG---------------CGAAUCGCUGGCGUUGGUAAAAUGUGCGAAAAAUAAAGCACG-------CGAAACGCCGACA---
..(((((.(((((....)))....(((-----((....))---------------))).)).)))))((((((....(((((..........)))))-------......)))))).--- ( -29.30)
>consensus
CACGCAAUGAUAUGCAAAUAAAUGUCGGCACCCAAAAACGAGGAGCGC___AAAUAAAAUUGUUGGCGCUGA_AAAAUGUGCGAAAAAAGAAGCAGU_______GAAAAUGCGAAAA___
..(((...(((((........))))).......................................((((.........))))............................)))....... ( -5.50 =  -5.67 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:42 2006