| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,910,130 – 20,910,250 |
| Length | 120 |
| Max. P | 0.979697 |
| Location | 20,910,130 – 20,910,250 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.92 |
| Mean single sequence MFE | -38.88 |
| Consensus MFE | -28.22 |
| Energy contribution | -27.46 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.979697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20910130 120 - 22224390 ACAAUUGGCCACACAACUGCAGCAAGUGUGGCCAGGUCUUUCGCACAUCAGGCUUUAUGCGCAUGCACUCCGUGAAUGCCUGUGCGCGAAACUUACACAAGUUUAAAAUAACUAAGCCAA .....(((((((((...........)))))))))(((.((((((.((.(((((((((((.(........))))))).))))))).))))))........((((......))))..))).. ( -40.80) >DroSec_CAF1 25581 119 - 1 ACAAUUGGCCACACAACUGCAGCAAGUGUGGCCAGGUCUUCCGUACAUCAGGCUUUAUGCGCAUGCACUCCGUGAAUGCCUGUGAGCGCAACUUGCACAAGUUUAAAAUAUCUAAGCCA- .....(((((((((...........)))))))))((....))........(((((..(((((...(((...((....))..))).)))))((((....))))...........))))).- ( -35.30) >DroEre_CAF1 18735 120 - 1 ACACCUGGUCACACAAUUGCGGCAAGUGUGGCCAGGUCUUCCGCACAGAAGGCUUCAAGCGCAUGCACUCCUCUAAUGCCUGUGAGCGCAAUCUGAGCAAGUUCAAAAUCGCUAAGCCGA ..((((((((((((...........)))))))))))).............(((((..((((..(((.(((..(........).))).)))...((((....))))....))))))))).. ( -39.60) >DroYak_CAF1 22912 120 - 1 ACGCCUGGUCACACAACUGCAUCAAGUGUGGCCAGGUCUUUCGCACAGCGGGCUUCAAGCGCAUGCACUCCUCUAAUGCCUGUGAGCGCAAUCUGCACAAGUUCAAAAUCGCUAAGCCGA ..((((((((((((...........))))))))))))....(((...)))(((((..(((((((((.(((..(........).))).)))...)))....(........))))))))).. ( -39.40) >DroAna_CAF1 17365 118 - 1 ACAACUGGUCACACAAGUGCGAGAAGUGUGGCCAGAUCUUUCGCACGGCAGGCUUCAAGAGGAUGCAUGCCGAGGGAGCCUGUGAGCGCAAUUUGCUGAAAC--AGAAACUGAAAACCAA ....((((((((((...........))))))))))...((((((.(.(((((((((....((.......))...)))))))))..).))..((((......)--)))....))))..... ( -39.30) >consensus ACAACUGGUCACACAACUGCAGCAAGUGUGGCCAGGUCUUUCGCACAGCAGGCUUCAAGCGCAUGCACUCCGCGAAUGCCUGUGAGCGCAAUUUGCACAAGUUCAAAAUCGCUAAGCCAA ....((((((((((...........))))))))))......(((.((.(((((........................))))))).)))................................ (-28.22 = -27.46 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:41 2006