Locus 8421

Sequence ID X_DroMel_CAF1
Location 20,904,129 – 20,904,222
Length 93
Max. P 0.514422
window13837

overview

Window 7

Location 20,904,129 – 20,904,222
Length 93
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 84.88
Mean single sequence MFE -24.74
Consensus MFE -14.82
Energy contribution -14.26
Covariance contribution -0.56
Combinations/Pair 1.32
Mean z-score -2.05
Structure conservation index 0.60
SVM decision value -0.04
SVM RNA-class probability 0.514422
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20904129 93 + 22224390
UGUAAUUUUCGUAUUCAGAAUAAUUGAUACGAACUCUACAGGCCGCAGCU----GAAACGCCUGAUACCUGGGAUUUUCCAGCUGUGCAAAUGUAAA
.......(((((((.(((.....))))))))))...((((.((.((((((----((((..(((.......)))..))).)))))))))...)))).. ( -25.30)
>DroSec_CAF1 23318 91 + 1
UGUAAUUUUCGUAUUCAGAAUAAUUGA--AUAAUUCUACAGGCCGCAGCU----GAAACGCCUGAUACCUGGAAUUUUUUAGCUGUGCAGAUGUAAA
...........(((((((.....))))--)))....((((.((.((((((----((((..((........))....))))))))))))...)))).. ( -22.30)
>DroSim_CAF1 25199 93 + 1
UGUAAUUUUCGUAUUCAGAAUAAUUGAUAGGAACUCUACAGGCCGCAGCU----GAAACGCCUGAUACCUGGAAUUUUCUAGCUGUGCAAAUGUAAA
.......(((.(((.(((.....)))))).)))...((((.((.((((((----((((..((........))...)))).))))))))...)))).. ( -20.70)
>DroEre_CAF1 16607 93 + 1
UGUAAUGUUCGCAUUCAGAAUAAUUGAUAGGAGCUCCACAGGCCACAGCU----AAAACUCCUGAUAGCUGGCAUUUUCUAGCUGUGCAAACGUAGA
....(((((.((...............((((((.......(((....)))----....))))))((((((((......)))))))))).)))))... ( -22.20)
>DroYak_CAF1 20552 97 + 1
UCUAAUUUUUGUAUUCAGAAUAACUGAUAGGAACUCUAUGGGCCACAGGUCUCAGGAACUCCUGAUGCCUGGGAUUUUCUGACUGUGCAAAUGUAAA
.......(((((((((((((...((.((((.....)))).))((.(((((.(((((....))))).)))))))...))))))..)))))))...... ( -33.20)
>consensus
UGUAAUUUUCGUAUUCAGAAUAAUUGAUAGGAACUCUACAGGCCGCAGCU____GAAACGCCUGAUACCUGGAAUUUUCUAGCUGUGCAAAUGUAAA
..............((((.....)))).........((((.((.((((((....((((..((........))..))))..))))))))...)))).. (-14.82 = -14.26 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:37 2006