Locus 8416

Sequence ID X_DroMel_CAF1
Location 20,899,739 – 20,899,829
Length 90
Max. P 0.633137
window13826

overview

Window 6

Location 20,899,739 – 20,899,829
Length 90
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 88.24
Mean single sequence MFE -20.82
Consensus MFE -17.90
Energy contribution -18.02
Covariance contribution 0.13
Combinations/Pair 1.08
Mean z-score -1.46
Structure conservation index 0.86
SVM decision value 0.21
SVM RNA-class probability 0.633137
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20899739 90 - 22224390
AAAACACGUGACCAGGCGACGAGCUAAAAAUAAAGCAAGGACCUGUUAAAAAGGGAUUAAGUCCACCUGUUUGUGUUCCAAAGACACACA----------------
..((((((....((((.(((..(((........))).((..(((.......)))..))..)))..))))..)))))).............---------------- ( -18.30)
>DroSec_CAF1 19080 98 - 1
GAAACACGUGACCAGGUGACGAGCUAAAAAUAAAGCAAGGACCUGUUAAAAAGGGAUUAAGUCCACCUGUUUGUGUUCCAAAGACACACACAC--------ACACA
.......(((..((((((((..(((........))).((..(((.......)))..))..)).))))))..((((((.....)))))))))..--------..... ( -24.20)
>DroSim_CAF1 20909 106 - 1
GAAACACGUGACCAGGCGACGAGCUAAAAAUAAAGCAAGGACCUGUUAAAAAGGGAUUAAGUCCACCUGUUUGUGUUCCAAAGACACACACACACUAGCACACACA
.......(((..((((.(((..(((........))).((..(((.......)))..))..)))..))))..((((((.....)))))))))............... ( -21.50)
>DroYak_CAF1 16475 98 - 1
AAAACACGUGGCCGGGCGACGAGUUAAAAAUAAAGCAAGCACCUGUUAAAAAGGGAUUAAGUCCACCUGUUUGUGUUCCAAAGCCACACACAC--------ACCCA
.......(((((..((.(((...(((....))).(((((((.((.......))((((...))))...))))))))))))...)))))......--------..... ( -19.30)
>consensus
AAAACACGUGACCAGGCGACGAGCUAAAAAUAAAGCAAGGACCUGUUAAAAAGGGAUUAAGUCCACCUGUUUGUGUUCCAAAGACACACACAC________ACACA
.......(((..((((.(((..(((........))).((..(((.......)))..))..)))..))))..((((((.....)))))))))............... (-17.90 = -18.02 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:28 2006