Locus 8415

Sequence ID X_DroMel_CAF1
Location 20,891,741 – 20,891,846
Length 105
Max. P 0.905249
window13825

overview

Window 5

Location 20,891,741 – 20,891,846
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 86.38
Mean single sequence MFE -20.42
Consensus MFE -14.18
Energy contribution -16.30
Covariance contribution 2.12
Combinations/Pair 1.07
Mean z-score -2.47
Structure conservation index 0.69
SVM decision value 1.04
SVM RNA-class probability 0.905249
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20891741 105 - 22224390
AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUUAUCGUGUGAC-GUUCUUAUUCUUAUUUCAUUGUCACAAACCGAAUUUAAGGACAGCAAAAUCUUAAGUAA
.......(((((((((....(((((.((((((........((((((-(..................)))))))........))))))....)))))))))))))). ( -21.36)
>DroSec_CAF1 11527 102 - 1
AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUAAUCGUGUGAC-GUUCUUGUUU---UUUCAUUGUCACAAACCGAAUUUAAGGACAGGAUAAUCUUAAGUAA
.......(((((((((...((((((.((((((........((((((-(....((...---...)).)))))))........)))))).))))))..))))))))). ( -25.79)
>DroSim_CAF1 12593 102 - 1
AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUUAUCGUGUGAC-GUUCUCGUUU---UUUAACUGUCACAAACCGAAUUUAAGGACAGGAUAAUCUUAAGUAA
.......(((((((((...((((((.((((((........((((((-(.....(((.---...))))))))))........)))))).))))))..))))))))). ( -24.69)
>DroEre_CAF1 5833 100 - 1
AAUAAAAUACUUGACAACAAUUUUGGCUUUAAUAUUACCGUAUAAACGCU---AUUU---UUCCAUUGUCACAAAUCCAAUUUAAGGACAGCAUAAUCUUACUUAA
...........((((((......((((.((.((((....)))).)).)))---)...---.....))))))....(((.......))).................. (  -9.84)
>consensus
AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUUAUCGUGUGAC_GUUCUUAUUU___UUUCAUUGUCACAAACCGAAUUUAAGGACAGCAUAAUCUUAAGUAA
.......(((((((((...((((((.((((((........((((((.((...............)).))))))........)))))).))))))..))))))))). (-14.18 = -16.30 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:27 2006