| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,884,731 – 20,884,845 |
| Length | 114 |
| Max. P | 0.677349 |
| Location | 20,884,731 – 20,884,845 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.63 |
| Mean single sequence MFE | -39.77 |
| Consensus MFE | -26.55 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20884731 114 - 22224390 UCUAGCCCCCGA------UCCCGCUCUGCUCCAUCCAGGUGGGCUACCAUGGAUCGGGGCAGUAGCAGCACUCACUACUGCAACAUCGGCGGUGGUCGUAUUGCAGCUCGCAACAUGAAA ....((((((((------(((......((.((((....))))))......))))))))).(((.((((.((..((((((((.......)))))))).)).)))).))).))......... ( -45.00) >DroSec_CAF1 4587 112 - 1 UCUAGCCCCCGA------UCCCGCUCUGCUCCA--CAGGUGGGCUCCCAGCGAUCGGGGCAGUAGCAGCACUCACAACUGCAACAUCGGAGGUGGUCGUAUUGCAGCUCGCAACAUGAAA ....(((.((((------(...((((((((((.--..(.(((....))).)....))))))).))).(((........)))...))))).)))..((((.((((.....)))).)))).. ( -41.50) >DroSim_CAF1 5319 94 - 1 UCUAGCCCCCGA------UCCCGCUCUGCUCCA--CAGGUGGGCUCCCA------------------GCACUCACAACUGCAACAUCGGAGGUGGUCGUAUUGCAGCUCGCAACAUGAAA ....(((.((((------((((((.(((.....--))))))))......------------------(((........)))...))))).)))..((((.((((.....)))).)))).. ( -29.00) >DroYak_CAF1 5595 118 - 1 UAUAGCCCCCGAUCCCGAUCCCGCCCUGCUCCA--CAGGUGGGCUCCCAUGGAUCGGGGCAGUAGCAGCACUCACAACUGCAACAUCGGAGGUGGUCGCAUUGCAGCUCGCAACAUGAAA ....(((((((((((.((.((((((.((.....--)))))))).))....))))))))).(((.(((((((.(((..(((......)))..))))).))..))).))).))......... ( -43.60) >consensus UCUAGCCCCCGA______UCCCGCUCUGCUCCA__CAGGUGGGCUCCCAUGGAUCGGGGCAGUAGCAGCACUCACAACUGCAACAUCGGAGGUGGUCGUAUUGCAGCUCGCAACAUGAAA ....(((.((((.......(((((.(((.......))))))))........................(((........)))....)))).)))..((((.((((.....)))).)))).. (-26.55 = -26.80 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:25 2006