| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,882,203 – 20,882,321 |
| Length | 118 |
| Max. P | 0.500000 |
| Location | 20,882,203 – 20,882,321 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.52 |
| Mean single sequence MFE | -22.55 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20882203 118 + 22224390 -ACUUUCAAAAGUAAACA-ACGUUUGAAAAAUAUAAUUAAGUGUGCAUCAUACCGUAAAUAGGUUAUCAACAUUUCAGCAACAGCUGAAAAUGCCCAAUUUUGGUAUUUCACCAUUUGCA -..(((((((.((.....-)).)))))))...........(((((...))))).((((((.(((........(((((((....)))))))(((((.......)))))...))))))))). ( -25.00) >DroSec_CAF1 2088 119 + 1 -CAUUUCAAAAGUAAACAAACGUAUGAAAAAUAUAAUUAAGUGUGCAUCAUACCCUAAAUAGGUUAUCAACAUUUUAGUCGCAGCUGAAAAUGCCCAAUUUUGGUAUUUCACCAAUUGCA -..........((((......((((((...((((......))))...))))))........(((........(((((((....)))))))(((((.......)))))...)))..)))). ( -18.40) >DroSim_CAF1 2876 119 + 1 -CAUUUCAAAAGUAAACAAACGUUUGAAAAAUAUAAUUAAGUGUGCAUCAUACCCUAAAUAGGUUAUCAACAUUUCAGUCGCAGCUGAAAAUGCCCAAUUUUGGUAUUUCACCAUUUGCA -..(((((((.((......)).)))))))........((((((((....(((((..((((.((.(((.....(((((((....)))))))))).)).)))).)))))..)).)))))).. ( -20.30) >DroYak_CAF1 3036 120 + 1 CACUUUGGAAUGUAAACAAACGUAUUAAAAAUAUAAUUAGGUGUGCAUCAUACCGCAAACAGGUUAUCAACAUUUCCGCCGCAGGUGAAAAUGCCCAAUUUUGGUAUUUCACCAUUUGCU ...(((((.((((......)))).)))))..........((((((...))))))(((((..(((.............)))...(((((((.((((.......))))))))))).))))). ( -26.52) >consensus _AAUUUCAAAAGUAAACAAACGUAUGAAAAAUAUAAUUAAGUGUGCAUCAUACCCUAAAUAGGUUAUCAACAUUUCAGCCGCAGCUGAAAAUGCCCAAUUUUGGUAUUUCACCAUUUGCA ...(((((((.((......)).))))))).........((((((.......(((.......))).....)))))).....(((..((.(((((((.......)))))))...))..))). (-16.00 = -16.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:12 2006