Locus 8404

Sequence ID X_DroMel_CAF1
Location 20,871,974 – 20,872,090
Length 116
Max. P 0.641770
window13798

overview

Window 8

Location 20,871,974 – 20,872,090
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.28
Mean single sequence MFE -44.03
Consensus MFE -27.88
Energy contribution -29.97
Covariance contribution 2.09
Combinations/Pair 1.19
Mean z-score -2.04
Structure conservation index 0.63
SVM decision value 0.22
SVM RNA-class probability 0.641770
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20871974 116 + 22224390
----GCCACAUCACCUGUACUUUCAGCUCGGCUGGGCCUUUCUCUUCCUAGCCUUUUUGGCUCCACACGGUCCCUACGGCGCCCUGUGGAUGCGUGCCAUGCUGCUCAUUGGCUGCCUGA
----((((......(((......)))...(((((((..........)))))))....))))((((((.(((.((...)).))).)))))).(((.((((..........))))))).... ( -38.10)
>DroVir_CAF1 279 120 + 1
AGCAGCCGCAUCAUCUGUACUUUCAGCUGGGCUGGGCCUUUCUUUUUCUGGCCUUUUUGGCGCCGCACGGUCCAUUUGGUUCGCUUUGGAUGCGCGCCACCCUGCUCAUUGGGUGCAUCA
.(((.(((((.....)))......(((.(((..(((((...........)))))...((((((.(((...((((...((....)).)))))))))))))))).)))....)).))).... ( -42.30)
>DroPse_CAF1 300 120 + 1
AGCAGCCGCACCACCUCUACUUUCAGCUCGGCUGGGCCUUCCUCUUUCUGGCCUUCCUGGCCCCCCACGGCCCCUUCGGCUCGCUGUGGAUGCGGGCGAUGCUGCUGAUCGGCUGCAUCA
.(((((((..............(((((.(((..(((((...........)))))..)))((((((((((((..(....)...)))))))..).))))......))))).))))))).... ( -50.46)
>DroGri_CAF1 309 120 + 1
AGCAGCCGCAUCAUCUCUACUUUCAGCUGGGCUGGGCCUUUCUCUUUCUGGCGUUUGUGGCGCCACACGGUCCGUUUGGGUCGCUAUGGAUGCGCGCCACACUGCUCAUCGGCUGCAUCA
.(((((((.................((..((..(((.....)))..))..))((.((((((((.....(..((....))..)((.......))))))))))..))....))))))).... ( -46.10)
>DroMoj_CAF1 300 120 + 1
AACAGCCGCAUCAUCUCUAUUUUCAGCUGGGCUGGGCCUUCCUCUUUCUGGCGUUUCUAGCGCCCCAUGGACCCUUCGGUUCGCUGUGGAUGCGCGCUACUAUGCUCAUCGGCUGCAUCA
..((((((((((...........((((.((((((((...(((.......(((((.....)))))....)))...))))))))))))..)))))(.((......)).)...)))))..... ( -39.92)
>DroAna_CAF1 216 120 + 1
AGCAGCCGCACCAACUCUAUUUCCAACUGGGCUGGGCCUUCCUCUUCCUGGCCUUCCUGGCGCCGCACGGCCCCUUCGGCUCUCUGUGGAUGCGGGCCAUGCUCCUCAUCGGCUGCCUGA
.(((((((..................(..((..(((((...........))))).))..)....(((.((((((.((.((.....)).)).).))))).))).......))))))).... ( -47.30)
>consensus
AGCAGCCGCAUCAUCUCUACUUUCAGCUGGGCUGGGCCUUCCUCUUUCUGGCCUUUCUGGCGCCACACGGUCCCUUCGGCUCGCUGUGGAUGCGCGCCACGCUGCUCAUCGGCUGCAUCA
.(((((((((((.............((((((..(((((...........))))).))))))....(((((.((....))....))))))))))(((......))).....)))))).... (-27.88 = -29.97 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:04 2006