Locus 8403

Sequence ID X_DroMel_CAF1
Location 20,870,288 – 20,870,384
Length 96
Max. P 0.702193
window13797

overview

Window 7

Location 20,870,288 – 20,870,384
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 86.44
Mean single sequence MFE -20.83
Consensus MFE -16.19
Energy contribution -16.92
Covariance contribution 0.72
Combinations/Pair 1.12
Mean z-score -2.48
Structure conservation index 0.78
SVM decision value 0.35
SVM RNA-class probability 0.702193
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20870288 96 - 22224390
------GCACAACCUGUUUCCGACUCGACCAGGCCAACAAAACUUGGCCAA-AAGCACUCCAGAGAGUAUAUACACAUAUAGAACAAAGCAAACAACGGGUGC
------.....(((((((.............((((((......))))))..-..((((((....)))).((((....)))).......))....))))))).. ( -21.60)
>DroSec_CAF1 9043 96 - 1
------GCACAACCUGUUUCCGACUCGACCAGGCCAACAAAACUUGGCCAA-AAACACUCCAGAGAGUAUAUACACAUAUAGAACAAAGCAAACAACGGGUGC
------((((....(((((.(..........((((((......))))))..-....((((....))))....................).)))))....)))) ( -20.40)
>DroSim_CAF1 8474 96 - 1
------GCACAACCUGUUUCCGACUCGACCAGGCCAACAAAACUUGGCCAA-AAACACUCCAGAGAGUAUAUACACAUAUAGAACAAAGCAAACAACGGGUGC
------((((....(((((.(..........((((((......))))))..-....((((....))))....................).)))))....)))) ( -20.40)
>DroEre_CAF1 10041 96 - 1
------GCACAACCUGUUUCCGACUCGACCAGGCCAACAAAACUUGGCCAA-AAACACUCCAGAGAGUAUAUACACAUAUAGAACAAAGCAAACAACGGGUGC
------((((....(((((.(..........((((((......))))))..-....((((....))))....................).)))))....)))) ( -20.40)
>DroYak_CAF1 9326 96 - 1
------GCACAACCUGUUUCCGACUCGACCAGGCCAACAAAACUUGGCCAA-AAACACUCCAGAGAGUAUAUACACAUAUAGAACAAAGCAAACAACGGGUGC
------((((....(((((.(..........((((((......))))))..-....((((....))))....................).)))))....)))) ( -20.40)
>DroAna_CAF1 8892 91 - 1
ACACAAGCACAACCUGUUUUCGGUGCUUUCUGGCCAACAAAAGUUGGUCAAAAAACUCUCCAGAGAAUAUAUAUAUAUAUAUAU------------UGUUUAC
....((((((............))))))..((((((((....)))))))).....(((....)))((((((((....)))))))------------)...... ( -21.80)
>consensus
______GCACAACCUGUUUCCGACUCGACCAGGCCAACAAAACUUGGCCAA_AAACACUCCAGAGAGUAUAUACACAUAUAGAACAAAGCAAACAACGGGUGC
...........(((((((.............((((((......)))))).......((((....))))..........................))))))).. (-16.19 = -16.92 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:03 2006