Locus 8402

Sequence ID X_DroMel_CAF1
Location 20,869,448 – 20,869,540
Length 92
Max. P 0.530837
window13796

overview

Window 6

Location 20,869,448 – 20,869,540
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 90.03
Mean single sequence MFE -16.62
Consensus MFE -14.00
Energy contribution -14.24
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.29
Structure conservation index 0.84
SVM decision value -0.01
SVM RNA-class probability 0.530837
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20869448 92 - 22224390
GGGGUGUGCAGCAGCAACACAAAAAAAGCAAUGUAAAUCAGUUGAGUGUUAACGAAAUGCAAAUACCCUAAAAACGGAAUGAACAUUUACCA
(((((((...(((.((((((........((((........)))).)))))...)...)))..)))))))....................... ( -14.90)
>DroSec_CAF1 8223 88 - 1
GGGGUGUGCAG---CAACACAAC-AAAGCAAUGUAAUUCAGCUGAGUGUUACCGAAAUGCAAAUACCCUAAAAACGAAAUGAACAUUUACCA
((((((((((.---......(((-(.(((...........)))...)))).......))))..))))))....................... ( -16.44)
>DroSim_CAF1 7651 88 - 1
GGGGUGUGCAG---CAACACAAC-AAAGCAAUGUAAUUCAGCUGAGUGUUACCGAAAUGCAAAUACCCUAGAAACGGAACGAACAUUUACCA
((((((((((.---......(((-(.(((...........)))...)))).......))))..))))))....................... ( -16.44)
>DroEre_CAF1 9193 85 - 1
GGGGUGUGC------AACACAAC-AAAGCAAUGAAAAUCAGCUGAGUGUUACCGAAAUGCAAAUACCCUGAAAACGAAAUGAACAUUUACCA
(((((((((------(....(((-(.(((.((....))..)))...)))).......))))..))))))....................... ( -14.70)
>DroYak_CAF1 8532 85 - 1
GGGGUGUGC------AACACAAC-AAAGCAAUGGAAAUCAGCUGAGUGUUGCCGAAAUGCACAUACCCUAAAAACGAAAUGAACAUUUAACA
(((((((((------(...((((-(.(((.((....))..)))...)))))......))))))).)))........................ ( -20.60)
>consensus
GGGGUGUGCAG___CAACACAAC_AAAGCAAUGUAAAUCAGCUGAGUGUUACCGAAAUGCAAAUACCCUAAAAACGAAAUGAACAUUUACCA
((((((((((.....(((((......(((...........)))..))))).......))))..))))))....................... (-14.00 = -14.24 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:02 2006