| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,867,033 – 20,867,123 |
| Length | 90 |
| Max. P | 0.853619 |
| Location | 20,867,033 – 20,867,123 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 71.99 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -5.97 |
| Energy contribution | -5.72 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20867033 90 - 22224390 ---AGCCACGGCAAA--AA---UUGUGUA------AAUUAUUUUGAGGCGAAAGCAGAAAUCGAAGAAAAAAUAAACAA--AAACACUUAAUCACUCA----AUGGCCAU--- ---......(((...--.(---(((.((.------.....((((((.((....)).....))))))......(((....--......)))...)).))----)).)))..--- ( -13.90) >DroSec_CAF1 6008 84 - 1 ---------GGCAAA--AA---UUUUGUA------GAUUAUUUUGAGGCGAAAGCAGAAAUCGAAGAAAAAAUAAACAA--AAACACUUAAUCACUCA----AUGGCCAU--- ---------(((...--.(---((..((.------(((((((((((.((....)).....)))))).............--.......)))))))..)----)).)))..--- ( -14.05) >DroSim_CAF1 5518 84 - 1 ---------GGCAAA--AA---UUUUGUA------GAUUAUUUUGAGGCGAAAGCAGAAAUCGAAAAAAAAAUAAACAA--AAACACUUAAUCACUCA----AUGGCCAU--- ---------(((...--.(---((..((.------(((((((((((.((....)).....)))))).............--.......)))))))..)----)).)))..--- ( -14.35) >DroEre_CAF1 6680 88 - 1 ---AGCCACAGCAAAA-AA---UUUUCAA------AAUUAUUUUGGGGCGAAAGCAGAAAUGAUAAA---CAAAAAUAA--AAACACUUAAUCACUCA----UUGGCCAU--- ---.((((........-..---.......------.((((((((...((....)).))))))))...---......(((--......)))........----.))))...--- ( -13.20) >DroYak_CAF1 6249 82 - 1 ---AGCCACAGCAAA--AA---UGUUCAA------AAUUAUUUCGAGGCGAAAGCAGAAAU-----------AAAAAAA--AAACACUUAAUCACUCA----UUGGUCAUGUA ---.((((.((((..--..---))))...------..(((((((...((....)).)))))-----------)).....--.................----.))))...... ( -13.80) >DroAna_CAF1 5381 110 - 1 AAAAACAAAAGAAAAAAAAUAUUUGUGUAAAAAACGAUGUUUUUGGAGCGAAAGCAGCAAAAAAAAAAAGAAAAGACAAGAAAUCACUUAAUCACUCGGUUGUUGGUCAU--- ...(((((..((..(((((((((.((.......)))))))))))...((....))........................................))..)))))......--- ( -14.10) >consensus ___AGCCACAGCAAA__AA___UUUUGUA______AAUUAUUUUGAGGCGAAAGCAGAAAUCGAAAAAAAAAAAAACAA__AAACACUUAAUCACUCA____AUGGCCAU___ .......................................(((((...((....)).))))).................................................... ( -5.97 = -5.72 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:01 2006