Locus 8399

Sequence ID X_DroMel_CAF1
Location 20,859,551 – 20,859,643
Length 92
Max. P 0.737741
window13793

overview

Window 3

Location 20,859,551 – 20,859,643
Length 92
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 82.25
Mean single sequence MFE -39.28
Consensus MFE -26.34
Energy contribution -26.93
Covariance contribution 0.59
Combinations/Pair 1.35
Mean z-score -2.12
Structure conservation index 0.67
SVM decision value 0.44
SVM RNA-class probability 0.737741
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20859551 92 - 22224390
UAGUGGCUGCCGCCGUUGGUGG---U------GCCAUUGGCCUUGGGCUUCUGCUUGCCGGCGGCAAUGAAAGUGGUCACGUCCAGCUUGGUGGCCAGAGC
...((((..((((((((((..(---.------((....((((...))))...)))..)))))))).....((((((......))).)))))..)))).... ( -42.30)
>DroSec_CAF1 1686 92 - 1
UAGUGGCUGCCGCCGUUGGUGG---U------GCCAUUGGCCUUGGGCUUCUGCUUGCCGGCGGCAAUGAAAGUGGUCACGUCCAGCUUGGUGGCCAGAGC
...((((..((((((((((..(---.------((....((((...))))...)))..)))))))).....((((((......))).)))))..)))).... ( -42.30)
>DroEre_CAF1 5174 92 - 1
UAGUGGCUGCCGCCGUUGGUGG---U------GCCAUUGGCCUUGGGCUUUUGCUUGCCGGCGGCAAUGAAAGUGGUCACGUCCAGCUUGGUGGCCAGAGC
...((((..((((((((((..(---.------((.(..((((...))))..))))..)))))))).....((((((......))).)))))..)))).... ( -42.50)
>DroYak_CAF1 3767 92 - 1
UAGUGGUUGCCGCCGUUGGUGG---U------GCCAUUGGCCUUGGGUUUCUGCUUGCCGGCGGCAAUGAAAGUGGUCACGUCCAGCUUGGUGGCCAGAGC
...((((..((((((((((..(---.------((....((((...))))...)))..)))))))).....((((((......))).)))))..)))).... ( -38.40)
>DroAna_CAF1 1618 92 - 1
UAGUGGGUGUUGCCAUUGGUGG---U------GCCAUUGAUCUUUUCACUGGGAUUACCGUUGGCUAUGAAAUUGGUUACAUCCAGCUUAGUGGCCAGAGC
.(((((......)))))(((((---(------.(((.(((.....))).))).)))))).((((((((.((.((((......)))).)).))))))))... ( -32.60)
>DroPer_CAF1 1634 98 - 1
UAGUGGCUGUUGCCGUUGGUGGCGGUGCCAUUGCCAUUGGCAUUGACCUUUUU---CUCAGCCACAAUGAAUGAGGUCACAUCCAGCUUGGUGGCCAGCGA
.....(((((..((((..((((((((...))))))))..))..(((((((.((---(...........))).)))))))..........))..).)))).. ( -37.60)
>consensus
UAGUGGCUGCCGCCGUUGGUGG___U______GCCAUUGGCCUUGGGCUUCUGCUUGCCGGCGGCAAUGAAAGUGGUCACGUCCAGCUUGGUGGCCAGAGC
.......(((((((((..((((...........))))..))....(((........)))))))))).......(((((((..........))))))).... (-26.34 = -26.93 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:59 2006