Locus 8398

Sequence ID X_DroMel_CAF1
Location 20,854,299 – 20,854,402
Length 103
Max. P 0.585841
window13792

overview

Window 2

Location 20,854,299 – 20,854,402
Length 103
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 82.60
Mean single sequence MFE -26.48
Consensus MFE -23.38
Energy contribution -23.82
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.47
Structure conservation index 0.88
SVM decision value 0.10
SVM RNA-class probability 0.585841
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20854299 103 - 22224390
UUGACCUUCAGCUUGGGGGACAUCAGGUCCUCGGGGUUGGCGAAGGUCUGAAAAUGAAGAUACCGAUUAAAGAAUCGAAAUACAUAAAAUUAGGAA--UGUGAUG
..((((((((((((.((((((.....)))))).)))))...)))))))...............(((((....)))))...(((((..........)--))))... ( -29.00)
>DroSec_CAF1 9575 100 - 1
UUGACCUUCAGCUUGGGGGACAUCAGGUCCUCGGGGUUGGCGAAGGUCUGAAAAUGAAGAUACCGAUUAGAGAAUCUUAAUACAAAAACUUAGGGA--UGUG---
..((((((((((((.((((((.....)))))).)))))...)))))))........(((((.((.....).).)))))..................--....--- ( -26.90)
>DroSim_CAF1 10681 100 - 1
UUGACCUUCAGCUUGGGGGACAUCAGGUCCUCGGGGUUGGCGAAGGUCUGAAAAUGAACAUACCGAUUAGAGAAUCUUAAUACAAUAACUUAGGGA--UGUG---
..((((((((((((.((((((.....)))))).)))))...))))))).........((((.((((((....))))(((......)))....)).)--))).--- ( -28.30)
>DroEre_CAF1 10762 94 - 1
UUAACCUUCAGCUUGGGGGACAUCAGAUCCUCGGGGUUGGCGAAGGUCUGAAAACGAGGAUAACGAUUAGAACAUCGAAC-----AAA---AGCAAUGCAUA---
..........((((..(.........(((((((.....(((....)))......)))))))..((((......))))..)-----..)---)))........--- ( -23.20)
>DroYak_CAF1 10353 97 - 1
UUGACCUUUAGCUUGGGGGACAACAGGUCCUCGGGGUUGGCGAAGGUCUGAAAACGAAGAUAACGAUUAGAAAAUCAUACUUUCUUAA---AGCAA--CAUG---
..((((((((((((.((((((.....)))))).)))))...)))))))........((((....((((....))))......))))..---.....--....--- ( -25.00)
>consensus
UUGACCUUCAGCUUGGGGGACAUCAGGUCCUCGGGGUUGGCGAAGGUCUGAAAAUGAAGAUACCGAUUAGAGAAUCGUAAUACAAAAA_UUAGGAA__UGUG___
..((((((((((((.((((((.....)))))).)))))...)))))))................((((....))))............................. (-23.38 = -23.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:58 2006