Locus 8395

Sequence ID X_DroMel_CAF1
Location 20,829,633 – 20,829,735
Length 102
Max. P 0.500000
window13785

overview

Window 5

Location 20,829,633 – 20,829,735
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.89
Mean single sequence MFE -41.20
Consensus MFE -24.45
Energy contribution -24.70
Covariance contribution 0.25
Combinations/Pair 1.08
Mean z-score -1.84
Structure conservation index 0.59
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20829633 102 + 22224390
CUCCAACUCC------------GGACUCCCUGCUCGUAUUACCCAUUUUAGUCCAGCCCGAACUGCGGCAUUAUGUUC-GAGGGUUGGCUGGGAG-----UCCGGGGGCAGUGGGAUAUA
.((((.((((------------((((((((.....(.....).......((.(((((((((((...........))))-..))))))))))))))-----)))))))....))))..... ( -43.10)
>DroSec_CAF1 6888 112 + 1
CUCCAACUCCGGAACCGGACCCGGACUCCCUGCUCGUAUUACCCAUUUUAGUCCAGCCCGGACUGCGGCAUUAUGUUC-GAGGGUUGGCUG-GAG-----U-CGGGGGCAGUGGGAUAUA
.(((.((((((....))))(((.((((((..(((......((((....((((((.....))))))((((.....).))-).)))).))).)-)))-----)-).)))...)).))).... ( -43.60)
>DroEre_CAF1 23316 107 + 1
CUCCACCUCCGGACU-----CCAAACUCCCUGCUCGUAUUACCCAU-UUAGUCCAGCCCGAACUGCGGCAUGUUGUUUGGAGGGUUGGCCG-GAG-----U-CGGGAGAAGUGGGAUAUA
.(((((((((.((((-----((...(.(((((((.(.((((.....-.))))).)))((((((.((.....)).))))))))))..)...)-)))-----)-).))))..)))))..... ( -40.20)
>DroYak_CAF1 25014 105 + 1
CUCCACCUCCGGAC------------UCCCUGCUCGUAUUACCCAUUUUAGUCCAGCCCAAACUGCGGCAUUAUGUUU-GAGGGUUGGCUG-GAGUCGAGU-CGGGAGAAGUGGGAUAUA
.(((((((((.(((------------((...(((((.....)......(((.(((((((.....(((......)))..-..))))))))))-)))).))))-).))))..)))))..... ( -37.90)
>consensus
CUCCAACUCCGGAC________GGACUCCCUGCUCGUAUUACCCAUUUUAGUCCAGCCCGAACUGCGGCAUUAUGUUC_GAGGGUUGGCUG_GAG_____U_CGGGAGAAGUGGGAUAUA
..........................(((((((((.................(((((((.....(((......))).....)))))))(((((.......))))))))))).)))..... (-24.45 = -24.70 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:52 2006