Locus 8393

Sequence ID X_DroMel_CAF1
Location 20,827,826 – 20,827,942
Length 116
Max. P 0.703900
window13783

overview

Window 3

Location 20,827,826 – 20,827,942
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.75
Mean single sequence MFE -41.48
Consensus MFE -32.28
Energy contribution -33.77
Covariance contribution 1.50
Combinations/Pair 1.18
Mean z-score -1.68
Structure conservation index 0.78
SVM decision value 0.36
SVM RNA-class probability 0.703900
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20827826 116 - 22224390
CAGAGACUUUUCCUAGCUUUUCCGCAUAUUUGGCAUUGCACUGCUCUGGCCU-UUCGGAGGCGGAAAAAUCGGAGAAAAAGUGCGUGCCAUUGGUGAAAGUGAG---GGCAACUGUCUGU
((((.(.((.((((.(((((..(.((....((((((.(((((.((((((..(-((((....)))))...))))))....))))))))))).)))..))))).))---)).)).).)))). ( -41.50)
>DroSec_CAF1 5029 120 - 1
CACAGACUUUUCCCAGCUUUUCCGCAUAUUUGGCAUUGCACUGCUCUGGCCUUUUCAGGGGCGGAAAAAUCGGUGAAAAAGUGCGUGCCAUUGGUGAAAGUGAGAGGGGCAACUGUCUGU
.((((((..(((((..(((.....(((...((((((.(((((.((((((.....))))))((.((....)).)).....)))))))))))...))).....)))..))).))..)))))) ( -43.20)
>DroEre_CAF1 21783 117 - 1
CAGAGACUUUUCCUAGCUUUUCCGCACAUUUGGCAUUGCACUCCUCUGGCUU-UUGGGGGGCGGGAAAAUCCGAGAAAAAGUGCGUGCCCUCGGUGAAAGUAGG--GGGAAACUGUCUCU
.((((((.((((((.(((((((((.......(((((.(((((((((..(...-)..)))).(((......)))......))))))))))..))).))))))...--))))))..)))))) ( -43.00)
>DroYak_CAF1 23239 117 - 1
CAGAGACUUUUCCUAGCUUUUCCGCAUAUUCGGCAUUGCACUCCGCUGGCUU-UUCGGGGGCGGGAAAAUCGGAGAAAAAGUGCGUGCCACCGGUGAAAGUGAG--GGGAAACUGUCUGC
((((.(.(((((((.(((((((((.......(((((.((((((((((.((((-.....)))).)).....))))......)))))))))..))).))))))..)--)))))).).)))). ( -38.20)
>consensus
CAGAGACUUUUCCUAGCUUUUCCGCAUAUUUGGCAUUGCACUCCUCUGGCCU_UUCGGGGGCGGAAAAAUCGGAGAAAAAGUGCGUGCCAUCGGUGAAAGUGAG__GGGAAACUGUCUGU
.((((((.((((((..(((.....(((...((((((.(((((.(((((((((......))))........)))))....)))))))))))...))).....)))..))))))..)))))) (-32.28 = -33.77 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:50 2006