Locus 8388

Sequence ID X_DroMel_CAF1
Location 20,821,735 – 20,821,853
Length 118
Max. P 0.553453
window13776

overview

Window 6

Location 20,821,735 – 20,821,853
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.26
Mean single sequence MFE -36.53
Consensus MFE -32.30
Energy contribution -32.97
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.88
SVM decision value 0.04
SVM RNA-class probability 0.553453
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20821735 118 + 22224390
GACAGCGACGCCUCUGUUAAGUUUGCAGAUU-UCAGUUUGCCGGUUUUGCGGCAUGUUGCAAGCCGAGGUGUUUCCCCAAAAUCAAACAGGAUCUGCACGCAACCCACCACCCAU-UUCC
(((((.(....).)))))..((.((((((((-(..(((((.((((((.((((....)))))))))).((.......)).....))))).))))))))).))..............-.... ( -31.50)
>DroEre_CAF1 15031 120 + 1
GACAGCGACGUCGCUGUUAAGUUUGCAGAUUUUCAGUUUGCCGGUUUUGCGGCAUGUUGCAAGCCGAGGUGUUUCCCCAACAUCAAACAGGAUCUGCAAGCAACCCACCACCCAUUUUCC
(((((((....)))))))..(((((((((((((..((((..((((((.((((....)))))))))).((((((.....)))))))))))))))))))))))................... ( -43.40)
>DroYak_CAF1 17119 119 + 1
GACAGCGACGUCACUGUUAAGUUUGCAGAAU-UCAGUUUGCCGGUUUUGCGGCAUGUUGCAAGCCGAGGUGUUUCCCCAAAAUCAAACAGGAUCUGCAAGCAACCCACCACCCACUUUCC
(((((.(....).)))))..(((((((((.(-((.(((((.((((((.((((....)))))))))).((.......)).....))))).))))))))))))................... ( -34.70)
>consensus
GACAGCGACGUCACUGUUAAGUUUGCAGAUU_UCAGUUUGCCGGUUUUGCGGCAUGUUGCAAGCCGAGGUGUUUCCCCAAAAUCAAACAGGAUCUGCAAGCAACCCACCACCCAUUUUCC
(((((.(....).)))))..(((((((((((....(((((.((((((.((((....)))))))))).((.......)).....)))))..)))))))))))................... (-32.30 = -32.97 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:44 2006