Locus 8387

Sequence ID X_DroMel_CAF1
Location 20,818,852 – 20,818,961
Length 109
Max. P 0.823169
window13775

overview

Window 5

Location 20,818,852 – 20,818,961
Length 109
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.83
Mean single sequence MFE -30.33
Consensus MFE -30.21
Energy contribution -30.10
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.42
Structure conservation index 1.00
SVM decision value 0.69
SVM RNA-class probability 0.823169
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20818852 109 - 22224390
CCAUUAUUAUCCGAAACGCAAUCAUGGCGAAAGUUAGAUUGUCUUUUUGCAGGUGGCAAGUGGUUGGCAAUACAGCUUUGUCUGCCGAUUUACCCUAUGCCUUAUGCCU-----------
............((((.((((((.((((....)))))))))).)))).(((...((((((.((((((((..((......)).)))))....))))).))))...)))..----------- ( -31.10)
>DroEre_CAF1 12192 120 - 1
CCAUUAUUAUCCAAAACGCAAUCAUGGCGAAAGUUAGAUUGUCUUUUUGCAGGUGGCAAGUGGUUGGCAAUACAGCUUUGUCUGCCGAUUUACCCUAUGCCUUAUGCCUUAUGCCUUAUG
............((((.((((((.((((....)))))))))).)))).(((...((((((.((((((((..((......)).)))))....))))).))))...)))............. ( -30.70)
>DroYak_CAF1 14783 109 - 1
UCAUUAUUAUCCGAAACGCAAUCAUGGCGAAAGUUAGAUUGUCUCUUUGCAGGUGGCAAGUGGUUGGCAAUAUAGCUCUGUCUGCCGAUUUACCCUAUGCCUUAUGCCU-----------
.................((((((.((((....))))))))))......(((...((((((.(((((((((((......))).)))))....))))).))))...)))..----------- ( -29.20)
>consensus
CCAUUAUUAUCCGAAACGCAAUCAUGGCGAAAGUUAGAUUGUCUUUUUGCAGGUGGCAAGUGGUUGGCAAUACAGCUUUGUCUGCCGAUUUACCCUAUGCCUUAUGCCU___________
............((((.((((((.((((....)))))))))).)))).(((...((((((.((((((((..(((....))).)))))....))))).))))...)))............. (-30.21 = -30.10 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:43 2006