Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,816,425 – 20,816,539 |
Length | 114 |
Max. P | 0.882491 |
Location | 20,816,425 – 20,816,539 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.47 |
Mean single sequence MFE | -39.20 |
Consensus MFE | -31.77 |
Energy contribution | -32.00 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.10 |
Mean z-score | -2.57 |
Structure conservation index | 0.81 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20816425 114 - 22224390 UUCUUC------UUGGGUGUUGCAAGUAUAUGCUGCCAUCCUUAAGUGAGGGAGUCCCUUUUUUUUGGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUAGGAGUGGGAACGACCGAAA ((((((------(((((((((((((((((((((..(((.((..(((.(((((...))))).)))..)))))..))))))))))))........)))))))))))).((......))))). ( -43.30) >DroEre_CAF1 7475 119 - 1 UUCUUCUCCAUUUUGGGUGUUGCAAGCUUAUGGUGCCUUCCUUGAGCGAGGGUGUCCCUUUUUU-UGGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUUGGAUUGGCAACGACCGAAA ..........((((((.((((((..(((((.((......)).))))).((((((((...((...-(((..(((......)))..)))...)).))))))))......)))))).)))))) ( -39.40) >DroYak_CAF1 12139 119 - 1 UUCUUCUCUACUUUGGGUGUUGCAAGUUUAUGCUGCCUUUCUUGAGUGAGGAUGUUCCUUUUUU-UUGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUAGGAUUGGAAACGACCGAAA ...(((.......((((((((((((((.(((((.((((..(..(((.((((.....)))).)))-..).))))))))).))))))........))))))))((.(((....)))))))). ( -34.90) >consensus UUCUUCUC_A_UUUGGGUGUUGCAAGUUUAUGCUGCCUUCCUUGAGUGAGGGUGUCCCUUUUUU_UGGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUAGGAUUGGAAACGACCGAAA (((..........((((((((((((((.(((((.(((..((..(((.(((((...))))).)))..))..)))))))).))))))........))))))))((.(((....)))))))). (-31.77 = -32.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:42 2006