Locus 8385

Sequence ID X_DroMel_CAF1
Location 20,812,751 – 20,812,851
Length 100
Max. P 0.841365
window13773

overview

Window 3

Location 20,812,751 – 20,812,851
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -29.93
Consensus MFE -29.71
Energy contribution -29.27
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.78
Structure conservation index 0.99
SVM decision value 0.75
SVM RNA-class probability 0.841365
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20812751 100 + 22224390
AUGGUGAGCACUCAUUUAGACUCAGAUCUCUGGCUAGUGCGUCAAUCCAUCAGUUGGUCAGUUGGUCAAUGAGUCAGUCGUCGACUUUCUGGCUUUCAAU
((((((((((((...(((((........)))))..))))).)))..))))..(..((((((..((((.((((.....)))).))))..))))))..)... ( -29.30)
>DroEre_CAF1 4780 100 + 1
AUGGUGAGCACUCAUUUAGACUCAGAUCUCUGACUAGUGCGUCAAUCCAUCAGUUGGUCAGUUGGUCAAUGAGUCAGUCGUCGACUUUCUGGCUUUCAAU
((((((((((((...(((((........)))))..))))).)))..))))..(..((((((..((((.((((.....)))).))))..))))))..)... ( -30.10)
>DroYak_CAF1 9034 100 + 1
AUGGUGAGCACUCAUUUAGGCUUAGAUCUCUGGCUAGUGCGUCAAUCCAUCAGUUGGUCAGUUGGUCAAUGAGUUCGUCGUCGACUUUCUGGCUUUCAAU
((((((((((((......((((.((....))))))))))).)))..))))..(..((((((..((((.((((.....)))).))))..))))))..)... ( -30.40)
>consensus
AUGGUGAGCACUCAUUUAGACUCAGAUCUCUGGCUAGUGCGUCAAUCCAUCAGUUGGUCAGUUGGUCAAUGAGUCAGUCGUCGACUUUCUGGCUUUCAAU
((((((((((((...(((((........)))))..))))).)))..))))..(..((((((..((((.((((.....)))).))))..))))))..)... (-29.71 = -29.27 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:41 2006