Locus 8379

Sequence ID X_DroMel_CAF1
Location 20,808,867 – 20,808,973
Length 106
Max. P 0.823667
window13761

overview

Window 1

Location 20,808,867 – 20,808,973
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.89
Mean single sequence MFE -16.83
Consensus MFE -15.77
Energy contribution -16.02
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.94
SVM decision value 0.69
SVM RNA-class probability 0.823667
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20808867 106 - 22224390
AGACUCAAUAAUAUAUUAAUGAGUAUUGGGCCUGGCUACCUUAUUAUAUAUUCGAUCAAAUCAUUUUUCCAGAUUUCUUUGAGUUGUUGCUUUUUAUUU----------AUUUUUU----
.(((((((.(((((((.((((((.....(((...)))..))))))))))))).....(((((.........)))))..)))))))..............----------.......---- ( -14.50)
>DroSim_CAF1 4584 116 - 1
AGACUCAAUCAUAUAUUAAUGAGUAUUGGCCCUGGCUACCUUAUUAUAUAUUCGAUCAAAUCAUUUUUCCAGAUUUCUUUGAGUUGUUGCUUUUUAUUUCUGUUUUUUUUUUUUUU----
.(((((((..((((((.((((((...((((....)))).))))))))))))......(((((.........)))))..)))))))...............................---- ( -17.60)
>DroEre_CAF1 895 110 - 1
AGACUCAAUCAUAUAUUAAUGAGUAUUGGCCCUGGCUACCUUAUUAUAUAUUCGAUCAAAUCAUUUUCCCAGAUUUCUUUGAGUUGUUGCUUUUUAUUU----------AUUUUUUUCUU
.(((((((..((((((.((((((...((((....)))).))))))))))))......(((((.........)))))..)))))))..............----------........... ( -17.60)
>DroYak_CAF1 5037 106 - 1
AGACUCAAUCAUAUAUUAAUGAGUAUUGGCCCUGGCUACCUUAUUAUAUAUUCGAUCAAAUCAUUUUCCCAGAUUUCUUUGAGUUGUUGCUUUUUAUUU----------AUUUUUU----
.(((((((..((((((.((((((...((((....)))).))))))))))))......(((((.........)))))..)))))))..............----------.......---- ( -17.60)
>consensus
AGACUCAAUCAUAUAUUAAUGAGUAUUGGCCCUGGCUACCUUAUUAUAUAUUCGAUCAAAUCAUUUUCCCAGAUUUCUUUGAGUUGUUGCUUUUUAUUU__________AUUUUUU____
.(((((((..((((((.((((((...((((....)))).))))))))))))......(((((.........)))))..)))))))................................... (-15.77 = -16.02 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:30 2006