Locus 8377

Sequence ID X_DroMel_CAF1
Location 20,800,157 – 20,800,277
Length 120
Max. P 0.750697
window13758

overview

Window 8

Location 20,800,157 – 20,800,277
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.56
Mean single sequence MFE -32.92
Consensus MFE -18.66
Energy contribution -21.60
Covariance contribution 2.94
Combinations/Pair 1.19
Mean z-score -1.92
Structure conservation index 0.57
SVM decision value 0.47
SVM RNA-class probability 0.750697
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20800157 120 - 22224390
AGGCGUUGGCACAGGGGAUCGGUCAAGGACCUUUCAAAUAGGUGAUAAUAAUGCCCCUGUGUGAAACGAAUUGGAUUGUAGUAUUUUUCAAUGCUAUCUAAUAGCUGAGACUGCAGUUCA
...((((.(((((((((...((((...))))..(((......)))........)))))))))..))))...(((((((((((....((((..(((((...)))))))))))))))))))) ( -40.90)
>DroSec_CAF1 128769 120 - 1
AGGCGUUGGCACAGGGGAUCGGUCAAGGACCUUUCAAAUAGGCGAUACUAAUGCCCUUGUGUGAAACGAAUUAGAUUGUAGUAUUUUUCAGUGCUAUCUAAUAGCUGAGACUGCAAUUCA
...((((.(((((((((...((((...)))).......(((......)))...)))))))))..)))).....(((((((((....((((((...........))))))))))))))).. ( -36.50)
>DroSim_CAF1 65807 96 - 1
AGGCGUUGGCACAG------------------------UAUGGCACACUAAUGCCCUUGUGUGAAACGAAUACGAUUGUAGUAUUUUUCAGUGCUAUCUUAUAGCUGCGACUGCAAUUCA
...((((.((((((------------------------...((((......)))).))))))..)))).....(((((((((........(((((((...))))).)).))))))))).. ( -25.10)
>DroEre_CAF1 51637 109 - 1
AGGCGUUGGCACAGGGGAUCGAUCAAGGACCUUUUAAAUGGGCGAUAAUAAUGCCCUUGCUCGAAGCGAAUUCGAUUGAAGUAUUUUUCAGUGCUC-----------AAUCUGCAAUUCA
..((.((((((.(((((.((......)).))))).....(((((.......))))).))).))).))((((((((((((.((((......))))))-----------)))).).))))). ( -29.20)
>consensus
AGGCGUUGGCACAGGGGAUCGGUCAAGGACCUUUCAAAUAGGCGAUAAUAAUGCCCUUGUGUGAAACGAAUUCGAUUGUAGUAUUUUUCAGUGCUAUCUAAUAGCUGAGACUGCAAUUCA
...((((.(((((((((............(((.......)))...........)))))))))..)))).....(((((((((....((((((...........))))))))))))))).. (-18.66 = -21.60 +   2.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:27 2006